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dbVar

Database of genomic structural variation

esv3770604

Organism: Homo sapiens

Study:estd192 (COSMIC)
Variant Type:tandem duplication
Method Type:Curated
Submitted on:GRCh37

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:8,588

Description:
Chr1:g.107829969_107839010dupinschr1:107838484_107838556
Publication(s):Forbes et al. 2008, Forbes et al. 2008, Stephens et al. 2009

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 69 SVs from 32 studies. See in: genome view

Remapped(Score: Perfect):107,287,347-107,295,934

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
esv3770604	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	107,287,347	107,295,934
esv3770604	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	107,295,862	107,296,388
esv3770604	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000001.10	Chr1	107,829,969	107,838,556
esv3770604	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000001.10	Chr1	107,838,484	107,839,010

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv16601003	intrachromosomal translocation	1126076	Curated	Curated	208
essv16641459	intrachromosomal translocation	1126076	Curated	Curated	208

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop	strand
essv16601003	Remapped	Perfect	GRCh38.p12	First Pass	NC_000001.11	Chr1	107,287,347	107,287,347	-
essv16641459	Remapped	Perfect	GRCh38.p12	First Pass	NC_000001.11	Chr1	107,295,862	107,295,862	-
essv16601003	Submitted genomic		GRCh37 (hg19)		NC_000001.10	Chr1	107,829,969	107,829,969	-
essv16641459	Submitted genomic		GRCh37 (hg19)		NC_000001.10	Chr1	107,838,484	107,838,484	-

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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