National Center for
Biotechnology Information

9GR1: E. coli 70S-TEC complex in delivery state

PDB ID:

9GR1 Download

MMDB ID:

255384

PDB Deposition Date:

2024/9/10

Updated in MMDB:

2024/12

Experimental Method:

electron microscopy

Resolution:

3.17 Å

Source Organism:

Escherichia coli BL21(DE3)▼

Taxonomy	Molecule
Escherichia coli BL21(DE3)	0, 1, 2, 3, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, a, b, c, d, e, f, g, h, i , j, k, l, m, n, o, p, q, r, s, t, u, v, w, x, y, z
synthetic construct	X, 4
Escherichia coli	Z, Y

Similar Structures:

Biological Unit for 9GR1: 55-meric; determined by author and by software

Molecular Components in 9GR1
Label	Count	Molecule
Proteins (48 molecules)
0	1	50S Ribosomal Protein L33
1	1	50S Ribosomal Protein L34
2	1	50S Ribosomal Protein L35
3	1	50S Ribosomal Protein L36
B	1	Small Ribosomal Subunit Protein US2
C	1	Small Ribosomal Subunit Protein US3
D	1	Small Ribosomal Subunit Protein US4
E	1	Small Ribosomal Subunit Protein US5
F	1	Small Ribosomal Subunit Protein Bs6, Fully Modified Isoform
G	1	Small Ribosomal Subunit Protein US7
H	1	Small Ribosomal Subunit Protein US8
I	1	Small Ribosomal Subunit Protein US9
J	1	Small Ribosomal Subunit Protein Us10
K	1	Small Ribosomal Subunit Protein Us11
L	1	Small Ribosomal Subunit Protein Us12
M	1	Small Ribosomal Subunit Protein Us13
N	1	Small Ribosomal Subunit Protein Us14
O	1	Small Ribosomal Subunit Protein Us15
P	1	30S Ribosomal Protein S16
Q	1	Small Ribosomal Subunit Protein Us17
R	1	Small Ribosomal Subunit Protein Bs18
S	1	30S Ribosomal Protein S19
T	1	Small Ribosomal Subunit Protein Bs20
U	1	Small Ribosomal Subunit Protein Bs21
c	1	50S Ribosomal Protein L2
d	1	Large Ribosomal Subunit Protein UL3
e	1	50S Ribosomal Protein L4
f	1	50S Ribosomal Protein L5
g	1	50S Ribosomal Protein L6
h	1	50S Ribosomal Protein L9
i	1	50S Ribosomal Protein L13
j	1	50S Ribosomal Protein L14
k	1	50S Ribosomal Protein L15
l	1	50S Ribosomal Protein L16
m	1	50S Ribosomal Protein L17
n	1	50S Ribosomal Protein L18
o	1	50S Ribosomal Protein L19
p	1	50S Ribosomal Protein L20
q	1	50S Ribosomal Protein L21
r	1	50S Ribosomal Protein L22
s	1	50S Ribosomal Protein L23
t	1	50S Ribosomal Protein L24
u	1	50S Ribosomal Protein L25
v	1	50S Ribosomal Protein L27
w	1	50S Ribosomal Protein L28
x	1	50S Ribosomal Protein L29
y	1	50S Ribosomal Protein L30
z	1	50S Ribosomal Protein L32
Nucleotides(7 molecules)
A	1	16S Ribosomal RNA
X	1	mRNA in Ribosome Channel
Z	1	Phe-nh-trna(phe) A-site
a	1	23S Ribosomal RNA
b	1	5S Ribosomal RNA
4	1	mRNA in Sd-asd Duplex
Y	1	tRNA(fmet) P-site
Chemicals and Non-standard biopolymers (530 molecules)
1	1	ZINC ION (Link to PubChem not yet available)
2	168	POTASSIUM ION (Link to PubChem not yet available)
3	360	MAGNESIUM ION (Link to PubChem not yet available)
4	1	PHENYLALANINE (Link to PubChem not yet available)

* Click molecule labels to explore molecular sequence information.

Citing MMDB

Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303