8ZDR: Cryo-EM structure of the Cas9d-sgRNA-target DNA complex

PDB ID: 8ZDRDownload
MMDB ID: 259495
PDB Deposition Date: 2024/5/3
Updated in MMDB: 2025/02
Experimental Method:
electron microscopy
Resolution: 2.65  Å
Source Organism:
Similar Structures:
Biological Unit for 8ZDR: tetrameric; determined by author and by software
Molecular Components in 8ZDR
Label Count Molecule
Protein (1 molecule)
1
a Protein
Molecule annotation
Nucleotides(3 molecules)
1
RNA (144-mer)
Molecule annotation
1
DNA (32-mer)
Molecule annotation
1
DNA (5'-d(p*cp*gp*gp*gp*tp*cp*ap*ap*ap*tp*g)-3')
Molecule annotation
Chemical and Non-standard biopolymers (1 molecule)
1
1
ZINC IONZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303