| Name | Size | Date (UTC) | Description | |
|---|---|---|---|---|
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Parent directory | - | 2025-03-15 02:59:52 | |
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aceread_tst.c | 51763 | 2024-01-03 21:54:04 | |
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alint.c | 5420 | 2008-11-11 19:44:53 | |
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asn2all.c | 58031 | 2019-01-16 19:47:27 | |
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asn2asn.c | 4890 | 2000-05-10 19:04:14 | This is a framework for reading an ASN.1 Seq-entry or Bioseq-set, doing some processing on it, and outputting it again. |
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asn2asn.mk | 4864 | 1997-08-25 18:18:52 | |
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asn2fast.c | 9197 | 2003-10-27 16:51:10 | |
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asn2ff.c | 13038 | 2001-12-21 20:21:51 | convert an ASN.1 entry to flat file format, using the FFPrintArrayPtrs. |
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asn2fsa.c | 40004 | 2017-03-19 01:51:02 | |
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asn2gb.c | 65261 | 2019-01-16 19:47:27 | New GenBank flatfile generator application |
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asn2idx.c | 7219 | 2010-11-12 19:25:18 | |
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asn2xml.c | 3750 | 2001-08-10 18:56:42 | This program is based on asn2asn.c but modified specifically to efficiently convert asn.1 Seq-entry or Bioseq-set into XML. |
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asnbarval.c | 35191 | 2010-02-23 20:20:33 | |
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asndhuff.c | 8002 | 1998-06-12 19:27:02 | asndhuff -- decompresses a compressed ASN,1 (CASN) file. |
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asndisc.c | 47029 | 2015-04-26 17:46:59 | |
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asnmacro.c | 20092 | 2015-09-03 13:52:16 | |
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asnstrip.c | 20017 | 2009-05-14 13:51:53 | |
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asnval.c | 81161 | 2019-01-16 19:47:27 | |
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batch.c | 38122 | 2000-08-30 16:44:20 | Main file for WWW and Command Line BatchEntrez programs |
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bbone.prt | 14014 | 1997-08-25 18:19:08 | |
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bioseq.ent | 1452 | 1997-08-25 18:19:10 | |
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bioseq.set | 13798 | 1997-08-25 18:19:11 | |
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bl2seq.c | 46840 | 2009-05-27 19:29:17 | COPYRIGHT NOTICE * This software/database is categorized as "United States Government * Work" under the terms of the United States Copyright Act. |
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blast_driver.c | 31649 | 2007-10-23 16:03:23 | File name: Author: Ilya Dondoshansky Contents: Main function for running BLAST $Revision: 1.129 $ |
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blastalign.c | 10866 | 2000-02-29 22:08:41 | This is a sample program to call BandAlign |
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blastall.c | 111944 | 2011-12-19 18:40:17 | COPYRIGHT NOTICE * This software/database is categorized as "United States Government * Work" under the terms of the United States Copyright Act. |
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blastclust.c | 52605 | 2011-12-19 18:40:17 | Program to perform a single-linkage clustering of a set of protein or DNA |
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blastpgp.c | 80254 | 2008-03-31 13:35:18 | |
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bulk2htgs.c | 12119 | 1999-11-03 15:01:22 | |
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ccp.c | 13284 | 1998-12-18 16:24:52 | coiled-coil prediction |
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ccpv.c | 13869 | 1998-09-16 18:40:33 | coiled coil prediction |
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cdscan.c | 24777 | 1998-06-12 16:36:33 | scans through sequence records on the Entrez discs |
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checksub.c | 1603 | 1998-08-24 20:42:32 | reads a sequenct submission with the object loaders |
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cleanasn.c | 377418 | 2017-03-27 20:22:03 | |
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cnsgn.c | 37682 | 1998-12-18 16:24:53 | consign - codon biased orf selection |
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cnsgnv.c | 30644 | 1999-03-13 03:43:16 | consign - codon biased orf assignment |
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cnsrt.c | 4448 | 1998-12-18 16:24:53 | consort - codon usage |
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cnsrtv.c | 13753 | 1998-09-16 18:40:34 | consort - codon usage/bias tree |
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condense.c | 15595 | 2003-05-13 16:02:42 | |
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copymat.c | 30355 | 2016-06-21 14:55:29 | File name: Authors: Alejandro Schaffer, Sergei Shavirin Contents: main routines for copymatrices program to convert score matrices output by makematrices into a single byte-encoded file. |
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cspeedtest.c | 37875 | 2012-12-20 22:10:28 | |
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debruijn.c | 3128 | 2004-02-09 21:24:59 | example driver for de Bruijn sequences. this code generates all n-mers over a protein or dna alphabet. useful for creating test sequences. |
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delta.prt | 10273 | 1997-08-25 18:19:26 | |
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diffshift.c | 5527 | 2010-11-26 19:03:55 | |
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dosimple.c | 675 | 1998-08-24 20:43:41 | test program for simple sequence (fasta format) |
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dotmain.c | 26891 | 2003-05-13 16:02:42 | contains main function for dot matrix viewer |
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dst.c | 8483 | 1998-12-18 16:24:54 | a dust utility |
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dtapp.c | 4149 | 1997-08-25 18:19:29 | Demo application in which the desktop is the main application |
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dustn.c | 5937 | 2003-05-13 16:02:42 | Author Hugues Sicotte Stand-alone program to dust one sequence. future improvements are to take a whole fasta library as input. |
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dustv.c | 15300 | 1998-11-12 20:04:11 | a dust utility |
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elecpcr.c | 32814 | 2002-07-25 14:15:09 | Main program for WWW and Command-Line Electronic PCR |
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entrcmd.c | 72294 | 2011-12-19 18:40:17 | non-interactive command line interface for Entrez |
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entrez.c | 50098 | 2006-07-13 17:12:38 | PUBLIC DOMAIN NOTICE National Center for Biotechnology Information (NCBI) This software/database is a "United States Government Work" under the terms of the United States Copyright Act. |
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entrez2.c | 36055 | 2012-06-11 22:38:42 | |
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epi.c | 10816 | 1999-02-25 15:09:17 | epi - protein and nucleic acid low complexity |
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epiv.c | 17072 | 1998-09-16 18:40:35 | low complexity regions in nucleotides and peptides |
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errhdr.c | 2420 | 1997-08-25 18:19:50 | include <ncbi.h> |
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example.prt | 10257 | 1997-08-25 18:19:51 | |
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export_cmt.c | 6789 | 2012-07-09 14:39:14 | |
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fa2htgs.c | 37926 | 2007-05-07 13:29:11 | This is a framework for reading an ASN.1 Seq-entry or Bioseq-set, doing some processing on it, and outputting it again. |
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fastacmd.c | 9931 | 2005-06-22 13:55:22 | FASTA retrievel system using ISAM indexes |
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fdef.c | 2666 | 1998-08-24 20:43:43 | |
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fdselect.c | 15543 | 2000-11-22 21:10:12 | Create few subsets of FASTA database. |
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fetchent.c | 10464 | 1999-01-25 18:15:27 | PUBLIC DOMAIN NOTICE National Center for Biotechnology Information (NCBI) This software/database is a "United States Government Work" under the terms of the United States Copyright Act. |
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findspl.c | 4367 | 1998-08-26 18:41:09 | Find protein splice sites |
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flint.c | 6291 | 2004-04-20 21:04:46 | |
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formatdb.c | 41140 | 2007-08-21 20:07:49 | formats FASTA databases for use by BLAST |
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formatrpsdb.c | 41594 | 2010-10-20 13:09:42 | convert a collection of files, each containing |
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gbf2tbl.pl | 14691 | 2019-03-01 18:43:44 | |
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gbf2xml.pl | 13565 | 2019-06-07 20:17:07 | |
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gbseqget.c | 13675 | 2004-04-26 16:51:16 | Demo to fetch by accession, write GBSet XML |
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gene2xml.c | 14861 | 2017-03-01 18:43:29 | |
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genget.c | 14005 | 2003-05-13 16:02:42 | entrez version |
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get_ec.pl | 3244 | 2012-02-16 18:23:47 | |
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getfasta.c | 4293 | 1998-08-24 20:43:44 | getseq.c entrez version |
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getmesh.c | 1560 | 1998-08-24 20:44:45 | gets mesh terms from a Medline-entry |
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getpub.c | 2286 | 2011-12-19 18:40:17 | |
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getunfin.c | 3515 | 2002-04-04 16:00:07 | include <ncbi.h> |
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gi2accn.c | 12641 | 2006-04-13 20:03:22 | |
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gil2bin.c | 3480 | 2011-12-19 18:40:17 | Revision 1.0$ $Log: ,v $ Revision 6.5 20 18:40:17 gouriano Corrected printf formatting. |
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idcleanscan.c | 30141 | 2000-06-27 21:19:00 | scans binary ASN.1 Bioseq-set release files in preparation for ID cleanup |
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indexpub.c | 1645 | 2011-12-19 18:40:17 | indexes a Pub-set by Medline UID |
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ingenmain.c | 11024 | 2003-05-13 16:02:42 | contains main function for ingenue |
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insdseqget.c | 13851 | 2010-11-12 19:25:18 | Demo to fetch by accession, write INSDSet XML |
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MakeGapTable.pl | 1711 | 2016-09-21 19:19:26 | |
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makemat.c | 21660 | 2005-07-28 14:52:22 | File name: Author: Alejandro Schaffer Contents: main routines for makematrices program to convert PSI-BLAST checkpoints into score matrices. |
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makeset.c | 2853 | 2016-09-02 15:04:17 | build a Bioseq-set from a bunch of Seq-entry files expects a file of file names in stdin prints the Bioseq-set out stdout in binary |
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medline.ent | 2207 | 1997-08-25 18:20:20 | |
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medline.prt | 36480 | 1997-08-25 18:20:22 | |
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megablast.c | 89027 | 2009-06-01 14:33:38 | COPYRIGHT NOTICE * This software/database is categorized as "United States Government * Work" under the terms of the United States Copyright Act. |
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mts.c | 11332 | 1999-07-13 13:07:33 | profile search |
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netentcf.c | 3644 | 1998-12-08 16:52:42 | Network Entrez configuration |
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nps2gps.c | 66912 | 2016-01-25 19:51:16 | |
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packfilt.c | 2684 | 1999-04-02 15:29:18 | |
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patric2tbl.pl | 1784 | 2012-02-13 15:20:29 | |
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profiles.c | 72833 | 2005-07-28 14:52:22 | |
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qbatch.c | 30031 | 2005-10-13 13:53:51 | WWW and Command-line Batch Entrez using Entre2 and ID1 |
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rast2sqn.sh | 606 | 2012-06-09 01:22:53 | |
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rastbatch.sh | 195 | 2012-02-13 15:20:29 | |
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raw2delt.c | 17348 | 2007-10-24 18:48:47 | |
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readbclhits.c | 4601 | 2002-10-08 15:31:55 | Program to read the binary hits file from blastclust and produce a text |
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reblobber.c | 58624 | 2012-03-23 20:54:23 | |
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releasescan.c | 11664 | 2003-08-27 12:52:14 | |
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replicon.c | 9971 | 2012-03-23 20:55:14 | |
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rpsblast.c | 27586 | 2008-07-23 14:06:57 | Main file for RPS BLAST program |
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rtestval.c | 7864 | 2004-10-07 21:31:19 | testval.c check translations check for stop codons Check for and fix non 3.0 asn spec things $ |
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sapcitfetch.c | 6960 | 2004-11-26 22:04:58 | |
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scantest.c | 60571 | 2012-11-01 19:20:16 | template for custom scans of ASN.1 release files |
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searchv.c | 15439 | 1999-03-13 03:43:45 | nucleotide or peptide pattern match |
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seedtop.c | 19702 | 2008-01-09 19:17:49 | File name: Authors: Zheng Zhang and Alejandro Schaffer Maintainer: Alejandro Schaffer Contents: main routine for pseed3, stand-alone counterpart to PHI-BLAST. |
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seqget.c | 4405 | 2003-05-13 16:02:42 | |
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seqtest.c | 5060 | 2011-12-19 18:40:17 | |
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setsts.c | 6057 | 1997-08-25 18:20:40 | Program for formatting memory map for WWW STS Search Tool |
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sgd2asn.c | 17554 | 2000-11-16 18:14:47 | |
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sigme.c | 12268 | 1998-12-18 16:24:56 | signal peptide and transmembrane region prediction |
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sigmev.c | 23014 | 1998-11-24 15:42:01 | signal peptides and transmembrane regions |
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snpscan.c | 25928 | 2000-06-06 15:30:10 | |
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snpsynon.c | 18254 | 2000-05-25 14:44:29 | |
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sortbyquote.c | 5775 | 2005-10-21 21:21:25 | |
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sortcmd.c | 11144 | 2006-05-11 18:56:29 | Main file for sortcmd standalone executable. |
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spideymain.c | 27743 | 2005-11-17 17:13:07 | main functions for running Spidey as a standalone |
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sqn2agp.c | 22965 | 2014-11-04 01:57:25 | |
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src_chk.c | 39652 | 2013-08-30 14:34:13 | |
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srchaa.c | 14765 | 1999-07-13 13:07:32 | peptide pattern match |
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srchnt.c | 10159 | 1999-07-13 13:07:32 | nucleotide pattern match |
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subfuse.c | 7122 | 2018-03-09 20:40:28 | |
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submit.prt | 10141 | 1997-08-25 18:20:46 | |
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sugint.c | 5803 | 2009-04-16 18:36:22 | |
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taxblast_main.c | 3202 | 2008-09-09 19:28:43 | |
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tbl2asn.c | 263202 | 2023-11-08 21:26:17 | |
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tbl_chk.c | 39225 | 2010-08-05 16:18:48 | |
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tblfix.pl | 11211 | 2014-07-22 21:00:07 | |
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test.prt | 14432 | 1997-08-25 18:20:48 | |
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testcgi.c | 31370 | 2007-06-26 17:59:29 | lm |
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testcore.c | 14696 | 2011-12-19 18:40:17 | Test CORELIB functionality |
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testent2.c | 20120 | 2014-11-04 19:28:11 | include <ncbi.h> |
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testmem.c | 1950 | 1999-04-02 14:53:44 | test transforms of asn.1 to and from memory buffer |
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testobj.c | 2168 | 1998-08-24 20:45:58 | test program for object loaders |
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testprt.c | 4289 | 1997-08-25 18:20:54 | test program for print functions |
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testval.c | 6504 | 2003-05-13 16:02:42 | check translations check for stop codons Check for and fix non 3.0 asn spec things |
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trna2sap.c | 14610 | 2005-10-04 20:22:19 | |
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trna2tbl.c | 6269 | 2024-05-16 15:28:15 | lm |
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trna2tbl.rb | 2051 | 2012-02-13 19:28:48 | |
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twop.c | 12716 | 1998-09-16 18:19:32 | best id blast of two proteins |
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twopv.c | 22429 | 1998-12-18 16:24:58 | region of best blast identity |
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udvmain.c | 9407 | 2000-04-10 21:41:26 | PUBLIC DOMAIN NOTICE National Center for Biotechnology Information (NCBI) This software/database is a "United States Government Work" under the terms of the United States Copyright Act. |
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vecscreen.c | 10083 | 2006-04-10 19:21:21 | |
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vsmapp.c | 4873 | 1997-08-25 18:20:56 | Demo application which puts up a single window and |
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xlint.c | 5304 | 2011-05-26 20:14:30 |