Census of bacterial signal transduction proteins

> Census of bacterial signal transduction proteins Signal transduction proteins encoded in genomes of 555 bacterial and archaeal species^a

This census is a web supplement to the paper "Interplay of heritage and habitat in the distribution of bacterial signal transduction systems"
by Michael Y. Galperin, Roger Higdon, and Eugene Kolker, published in in Mol. BioSyst. 2010, 6: 721-728. Abstract. Article outline.
It was a part of the Sentra database project (see the Abstract of the 2007 NAR database paper), which is no longer maintained
at the Argonne National Lab. You are welcome to cite either of these publications.

For a more recent update on c-di-GMP-related enzymes and receptors, see the c-di-GMP census.

A previous version of this census, covering genomes of 167 species, was created as a web supplement to the paper "A census
of membrane-bound and intracellular signal transduction proteins in bacteria: Bacterial IQ, extroverts and introverts"
by M.Y. Galperin, published in BMC Microbiology 2005, 5:35. Abstract. Full text (PDF). In 2007, it was expanded to 330 genomes.

An earlier version of this table, prepared for the review "Bacterial signal transduction network in a genomic perspective"
by M.Y. Galperin, published in Environ. Microbiol. 2004, 6, 552-567. Abstract. Full text (PDF) .

The first variant of this table, prepared for the review "Novel domains of the prokaryotic two-component signal transduction system",
by M.Y. Galperin, A.N. Nikolskaya and E.V. Koonin, published in FEMS Microbiol. Lett. 2001, 203, 11-21. Abstract. Full text (PDF).

Please send your corrections, questions and comments to Michael Galperin.

No.	Organism name	GenBank entry	All prot.	HisK	MCP	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	STYK	PP2C	RRs	All total	IQ
1	Candidatus Koribacter versatilis	CP000360	4777	67	3	6	-	2	10	-	4	1	31	15	99	238	126
2	Candidatus Solibacter usitatus	CP000473	7826	110	4	3	-	1	1	-	3	1	84	16	102	325	93
	Actinobacteria	GenBank	All	HisK	MCP	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	STYK	PP2C	RRs	Total	IQ
3	Acidothermus cellulolyticus	CP000481	2157	16	5	6	7	3	1	-	-	-	6	4	23	71	145
4	Arthrobacter aurescens	CP000474	4587	24	-	3	3	2	-	-	1	0*	8	5	20	67	67
5	Arthrobacter sp. FB24	CP000454	4506	29	-	1	4	4	-	-	1	0*	10	3	28	81	78
6	Bifidobacterium adolescentis	AP009256	1631	12	-	-	-	-	-	-	-	-	6	2	14	34	137
7	Bifidobacterium longum	AE014295	1727	9	-	-	-	-	-	-	-	-	7	2	10	28	121
8	Clavibacter michiganensis	AM711867	3079	27	-	-	-	-	-	-	-	0*	8	6	28	70	109
9	Corynebacterium diphtheriae	BX248353	2272	11	-	-	-	-	-	-	1	0*	4	1	11	29	96
10	Corynebacterium efficiens	BA000035	2950	13	-	-	-	-	-	-	1	0*	4	2	13	34	77
11	Corynebacterium glutamicum	BA000036	2993	13	-	-	1	-	-	-	1	0*	4	1	14	36	79
12	Corynebacterium jeikeium	CR931997	2137	9	-	-	-	-	-	-	1	-	5	1	9	25	94
13	Corynebacterium urealyticum	AM942444	2024	8	-	-	-	-	-	-	1	-	4	1	9	24	98
14	Frankia alni	CT573213	6711	45	-	9	7	6	1	-	2	1*	59	21	47	200	84
15	Frankia sp. CcI3	CP000249	4499	32	-	6	6	4	-	-	3	0*	35	16	31	134	104
16	Frankia sp. EAN1pec	CP000820	7191	64	-	26	10	9	-	-	5	0*	69	20	66	279	94
17	Kineococcus radiotolerans	CP000750	4681	38	22	39	34	10	1	-	-	0*	8	31	41	227	126
18	Kocuria rhizophila	AP009152	2357	13	-	-	-	-	-	-	1	0*	7	2	14	39	107
19	Leifsonia xyli	AE016822	2030	16	-	-	-	-	-	-	-	-	6	2	21	45	129
20	Mycobacterium abscessus	CU458896	4920	17	-	4	-	-	-	-	5	0*	17	1	19	64	58
21	Mycobacterium avium	AE016958	4350	19	-	2	2	1	1	-	12	0*	12	5	18	74	77
22	Mycobacterium bovis	BX248333	3920	13	-	-	1	1	-	-	16	0*	13	2	12	59	76
23	Mycobacterium gilvum	CP000656	5579	27	-	14	8	2	1	-	10	0*	15	8	28	119	76
24	Mycobacterium leprae	AL450380	1605	5	-	2	1	1	-	-	4	-	6	1	5	25	123
25	Mycobacterium marinum	CP000854	5452	19	-	-	-	-	-	-	31	0*	27	6	18	104	72
26	Mycobacterium smegmatis	CP000480	6716	34	-	1	1	-	-	-	8	0*	15	3	34	97	48
27	Mycobacterium sp. JLS	CP000580	5739	30	-	6	4	-	1	-	16	0*	16	8	31	115	72
28	Mycobacterium sp. KMS	CP000518	5975	29	-	5	4	-	1	-	15	0*	19	8	31	113	67
29	Mycobacterium sp. MCS	CP000384	5615	26	-	6	4	-	1	-	13	0*	16	8	28	103	68
30	Mycobacterium tuberculosis H37Rv	AL123456	3989	13	-	-	1	1	-	-	16	0*	13	2	13	60	76
31	Mycobacterium ulcerans	CP000325	4160	12	-	-	-	-	-	-	15	0*	14	3	15	60	71
32	Mycobacterium vanbaalenii	CP000511	5979	37	-	10	4	1	1	-	10	0*	13	6	36	119	69
33	Nocardia farcinica	AP006618	5936	37	-	6	2	-	-	-	4	-	25	7	32	113	67
34	Nocardioides sp. JS614	CP000509	4909	53	5	1	2	-	2	-	2	0*	13	7	46	132	94
35	Propionibacterium acnes	AE017283	2297	12	-	-	-	-	-	-	-	0*	4	2	13	32	99
36	Renibacterium salmoninarum	CP000910	3507	17	-	-	-	-	-	-	1	-	7	1	17	44	73
37	Rhodococcus jostii	CP000431	9145	46	-	4	3	-	1	-	7	0*	43	2	41	150	38
38	Rubrobacter xylanophilus	CP000386	3140	20	-	1	5	1	3	-	-	0*	9	4	19	63	102
39	Saccharopolyspora erythraea	AM420293	7197	49	-	14	11	1	1	-	2	-	25	4	49	157	65
40	Salinispora arenicola	CP000850	4917	33	-	8	6	2	-	-	3	-	11	8	32	103	82
41	Salinispora tropica	CP000667	4536	33	-	6	6	-	-	-	3	-	10	7	31	95	86
42	Streptomyces avermitilis	BA000030	7671	78	-	3	4	1	1	-	1	0*	35	50	67	241	80
43	Streptomyces coelicolor	AL645882	8154	95	-	3	4	-	1	-	1	0*	37	51	82	279	81
44	Streptomyces griseus	AP009493	7136	79	-	2	4	-	-	-	1	0*	38	41	75	240	87
45	Thermobifida fusca	CP000088	3110	28	-	1	2	1	2	-	1	-	25	15	27	102	127
46	Tropheryma whipplei	BX072543	783	2	-	-	-	-	-	-	-	-	4	1	2	9	144
	Aquificae	GenBank	All	HisK	MCP	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	STYK	PP2C	RRs	Total	IQ
47	Aquifex aeolicus	AE000657	1560	4	-	7	4	3	1	-	-	-	2	2	5	28	131
48	Hydrogenobaculum sp. Y04AAS1	CP001130	1629	6	9	10	6	2	-	-	-	-	1	1	8	43	148
49	Sulfurihydrogenibium sp. YO3AOP1	CP001080	1721	11	4	5	5	2	-	-	-	-	2	-	13	41	141
	Bacteroidetes	GenBank	All	HisK	MCP	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	STYK	PP2C	RRs	Total	IQ
50	Bacteroides fragilis	AP006841	4625	60	-	-	-	-	-	-	-	-	-	1	27	88	80
51	Bacteroides thetaiotaomicron	AE015928	4816	85	-	-	-	-	-	-	-	-	2	1	26	114	89
52	Bacteroides vulgatus	CP000139	4065	48	-	-	-	-	-	-	-	-	1	-	21	68	80
53	Candidatus Amoebophilus asiaticus	CP001102	1283	3	-	-	-	-	-	-	-	-	6	-	-	6	74
54	Candidatus Azobacteroides pseudotrichonymphae	AP010656	852	-	-	-	-	-	-	-	-	-	-	-	-	0	0
55	Candidatus Sulcia muelleri	CP000770	227	-	-	-	-	-	-	-	-	-	-	-	-	0	0
56	Cytophaga hutchinsonii	CP000383	3785	57	-	-	-	-	-	-	-	-	2	3	34	96	104
57	Flavobacterium johnsoniae	CP000685	5017	69	-	-	-	-	-	-	-	-	-	1	69	133	92
58	Flavobacterium psychrophilum	AM398681	2412	12	-	-	-	-	-	-	-	-	-	-	17	29	90
59	Gramella forsetii	CU207366	3584	31	-	-	-	-	-	-	2	-	2	-	34	71	95
60	Parabacteroides distasonis	CP000140	3850	63	-	-	-	-	-	-	-	-	-	2	28	89	99
61	Porphyromonas gingivalis	AE015924	1909	6	-	-	-	-	-	-	-	-	-	-	6	12	69
62	Salinibacter ruber	CP000159	2833	51	13	-	1	-	-	-	-	-	4	1	26	96	133
	Chlamydiae	GenBank	All	HisK	MCP	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	STYK	PP2C	RRs	Total	IQ
63	Candidatus Protochlamydia amoebophila	BX908798	2031	2	-	-	-	-	-	-	-	-	4	3	2	11	58
64	Chlamydia muridarum	AE002160	904	1	-	-	-	-	-	-	-	-	3	3	2	9	129
65	Chlamydia trachomatis	AE001273	895	1	-	-	-	-	-	-	-	-	3	3	2	9	130
66	Chlamydophila abortus	CR848038	932	1	-	-	-	-	-	-	-	-	3	3	2	9	126
67	Chlamydophila caviae	AE015925	1005	1	-	-	-	-	-	-	-	-	3	3	2	9	119
68	Chlamydophila felis	AP006861	1013	1	-	-	-	-	-	-	-	-	3	3	2	9	118
69	Chlamydophila pneumoniae	AE001363	1054	1	-	-	-	-	-	-	-	-	3	3	2	9	114
	Chlorobi	GenBank	All	HisK	MCP	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	STYK	PP2C	RRs	Total	IQ
70	Chlorobaculum parvum	CP001099	2043	10	-	1	-	-	-	-	1	-	-	-	7	30	108
71	Chlorobium chlorochromatii	CP000108	2002	4	-	1	-	-	-	-	-	-	1	-	3	9	50
72	Chlorobium limicola	CP001097	2434	13	-	1	-	-	-	-	1	-	-	1	7	37	101
73	Chlorobium phaeobacteroides	CP000492	2650	13	-	1	-	-	-	-	1	-	-	1	4	20	62
74	Chlorobium phaeovibrioides	CP000607	1753	9	-	1	-	-	1	-	-	-	-	-	6	18	98
75	Chlorobium tepidum	AE006470	2252	8	-	1	-	-	-	-	1	-	-	-	4	14	60
76	Chloroherpeton thalassium	CP001100	2710	35	2	8	-	-	6	-	4	1	-	2	25	108	144
77	Chlorobium luteolum	CP000096	2083	19	-	1	-	-	1	-	-	-	-	3	14	38	118
78	Pelodictyon phaeoclathratiforme	CP001110	2707	20	-	1	-	-	-	-	-	-	2	2	6	51	106
79	Prosthecochloris aestuarii	CP001108	2327	8	-	1	-	-	-	-	1	-	-	-	6	24	84
	Chloroflexi	GenBank	All	HisK	MCP	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	STYK	PP2C	RRs	Total	IQ
80	Chloroflexus aurantiacus	CP000909	3853	67	2	14	3	-	4	-	-	-	16	15	56	181	134
81	Dehalococcoides ethenogenes	CP000027	1580	19	-	1	-	-	3	-	-	-	-	-	25	48	157
82	Dehalococcoides sp. BAV1	CP000688	1371	15	-	1	-	-	-	-	-	-	-	-	18	33	152
83	Dehalococcoides sp. CBDB1	AJ965256	1458	26	-	1	-	-	3	-	-	-	-	-	28	58	175
84	Herpetosiphon aurantiacus	CP000875	5278	90	1	11	3	-	4	-	-	-	39	22	86	260	121
85	Roseiflexus castenholzii	CP000804	4330	60	3	8	3	-	5	-	-	-	27	12	61	180	122
86	Roseiflexus sp. RS-1	CP000686	4517	62	3	8	3	-	5	-	-	-	29	13	62	184	119
	Cyanobacteria	GenBank	All	HisK	MCP	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	STYK	PP2C	RRs	Total	IQ
87	Acaryochloris marina	CP000828	8383	91	7	26	27	5	-	-	8	-	64	7	81	304	82
88	Anabaena variabilis	CP000117	5657	129	3	8	6	1	2	-	5	-	59	9	65	287	119
89	Cyanothece sp. ATCC 51142	CP000806	5304	50	5	12	18	2	2	-	3	-	26	5	45	165	98
90	Cyanothece sp. PCC 7424	CP001291	5710	72	9	18	14	-	2	-	3	-	35	6	64	217	104
91	Cyanothece sp. PCC 8801	CP001287	4367	43	8	13	10	2	2	-	3	-	22	10	42	155	114
92	Gloeobacter violaceus	BA000045	4430	46	-	1	-	-	1	-	1	1	19	4	38	111	96
93	Microcystis aeruginosa	AP009552	6312	21	1	1	1	-	1	-	1	-	25	6	20	76	42
94	Nostoc punctiforme	CP001037	6690	158	7	11	10	1	2	-	8	-	60	9	84	331	109
95	Nostoc sp. PCC 7120	BA000019	6055	134	3	8	6	1	2	-	6	-	52	9	70	291	113
96	Prochlorococcus marinus	AE017126	1882	5	-	-	-	-	-	-	-	-	3	1	6	15	81
97	Synechococcus elongatus	AP008231	2525	15	2	9	8	1	2	-	2	-	8	3	17	67	127
98	Synechococcus sp. CC9311	CP000435	2892	11	-	1	3	-	-	-	1	-	5	1	16	38	85
99	Synechococcus sp. CC9605	CP000110	2645	6	-	-	-	-	-	-	1	-	4	1	9	21	64
100	Synechococcus sp. CC9902	CP000097	2307	7	-	-	-	-	-	-	-	-	4	1	7	19	73
101	Synechococcus sp. JA-3-3Ab	CP000239	2760	22	3	3	-	1	2	-	1	-	13	3	26	74	123
102	Synechococcus sp. PCC 7002	CP000951	3186	34	3	7	6	2	-	-	1	-	14	7	29	104	126
103	Synechococcus sp. RCC307	CT978603	2525	9	-	-	-	-	-	-	-	-	5	1	10	24	76
104	Synechococcus sp. WH 7803	CT971583	2533	10	-	-	-	-	-	-	-	-	5	1	13	28	83
105	Synechococcus sp. WH 8102	BX548020	2517	6	-	-	-	-	-	-	-	-	3	1	9	19	64
106	Synechocystis sp. PCC 6803	BA000022	3567	46	4	13	9	5	2	-	3	-	12	8	34	136	128
107	Thermosynechococcus elongatus	BA000039	2475	19	4	4	5	-	1	-	2	-	17	5	21	77	136
108	Trichodesmium erythraeum	CP000393	5124	35	3	1	3	-	2	-	13	-	48	10	24	139	93
	Deinococcus/ Thermus	GenBank	All	HisK	MCP	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	STYK	PP2C	RRs	Total	IQ
109	Deinococcus geothermalis	CP000359	2857	28	-	9	-	-	5	-	1	-	5	1	30	79	123
110	Deinococcus radiodurans	AE000513	3184	21	3	12	4	1	4	-	-	-	9	3	24	81	113
111	Thermus thermophilus	AE017221	2210	11	-	5	1	-	5	-	1	-	4	2	13	42	117
	Dictyoglomi	GenBank	All	HisK	MCP	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	STYK	PP2C	RRs	Total	IQ
112	Dictyoglomus thermophilum	CP001146	1912	4	-	9	-	-	8	-	1	-	2	1	6	31	116
113	Dictyoglomus turgidum	CP001251	1744	6	-	8	-	-	9	-	1	-	1	1	8	34	130
	Elusimicrobia	GenBank	All	HisK	MCP	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	STYK	PP2C	RRs	Total	IQ
114	Elusimicrobium minutum	CP001055	1529	6	-	2	-	-	1	-	-	-	3	2	5	19	114
115	Uncultured Termite group 1 bacterium phylotype Rs-D17	AP009510	776	-	-	-	-	-	-	-	-	-	-	-	-	0	0
	Firmicutes	GenBank	All	HisK	MCP	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	STYK	PP2C	RRs	Total	IQ
116	Alkaliphilus metalliredigens	CP000724	4625	62	25	10	4	1	16	-	-	-	4	6	61	189	118
117	Alkaliphilus oremlandii	CP000853	2836	34	20	9	4	1	3	-	-	-	3	3	36	114	142
118	Anoxybacillus flavithermus	CP000922	2832	23	17	12	6	2	8	-	-	-	3	3	20	97	134
119	Bacillus amyloliquefaciens	CP000560	3693	37	8	4	-	2	-	-	-	-	4	4	36	93	105
120	Bacillus anthracis str. Ames	AE016879	5311	47	13	3	6	1	1	-	-	-	5	4	46	128	85
121	Bacillus cereus	AE016877	5255	53	13	3	4	1	-	-	-	-	5	5	45	129	86
122	Bacillus clausii	AP006627	4096	43	7	1	-	1	1	-	-	-	6	4	41	104	100
123	Bacillus halodurans	BA000004	4066	44	12	3	1	1	2	-	-	-	4	4	46	117	107
124	Bacillus licheniformis	AE017333	4196	36	11	4	-	2	-	-	-	-	3	4	37	97	95
125	Bacillus pumilus	CP000813	3681	31	16	4	1	2	-	-	-	-	3	4	29	95	107
126	Bacillus subtilis	AL009126	4105	36	10	3	1	2	-	-	-	-	4	5	35	97	97
127	Bacillus thuringiensis	AE017355	5117	58	12	3	6	1	1	-	-	-	4	5	50	140	93
128	Bacillus weihenstephanensis	CP000903	5653	65	12	3	6	1	-	-	-	-	5	7	54	152	87
129	Caldicellulosiruptor saccharolyticus	CP000679	2679	23	10	4	3	-	10	-	1	-	2	3	29	84	132
130	Candidatus Desulforudis audaxviator	CP000860	2157	10	4	11	1	-	16	-	-	-	3	3	11	59	136
131	Carboxydothermus hydrogenoformans	CP000141	2620	14	11	10	1	1	13	-	-	-	4	2	19	75	129
132	Clostridium acetobutylicum	AE001437	3848	37	38	7	3	1	9	-	-	1	5	4	43	148	124
133	Clostridium beijerinckii	CP000721	5020	93	61	15	9	1	15	-	-	-	5	5	75	276	129
134	Clostridium botulinum	AM412317	3590	37	24	8	1	1	6	-	-	-	4	3	42	126	123
135	Clostridium difficile	AM180355	3753	50	1	18	18	1	-	-	-	-	3	3	52	146	126
136	Clostridium kluyveri	CP000673	3913	44	37	8	3	4	7	-	-	-	6	2	40	151	124
137	Clostridium novyi	CP000382	2325	22	17	4	3	1	4	-	-	1	5	2	19	78	143
138	Clostridium perfringens	BA000016	2723	27	-	5	1	2	1	-	-	1	3	2	21	63	116
139	Clostridium phytofermentans	CP000885	3902	59	28	9	5	-	7	-	-	-	3	3	62	174	131
140	Clostridium tetani	AE015927	2432	31	20	6	-	1	1	-	-	1	1	2	30	93	147
141	Clostridium thermocellum	CP000568	3189	33	15	9	1	-	8	-	-	-	6	8	30	110	128
142	Coprothermobacter proteolyticus	CP001145	1482	5	3	2	-	-	4	-	-	-	-	1	6	22	124
143	Desulfitobacterium hafniense	AP008230	5060	66	39	16	4	3	15	-	-	-	3	4	71	221	117
144	Desulfotomaculum reducens	CP000612	3276	30	23	13	1	1	15	-	1	-	2	4	30	120	130
145	Enterococcus faecalis	AE016830	3265	16	-	1	-	-	-	-	-	-	1	1	18	37	71
146	Exiguobacterium sibiricum	CP001022	3015	31	12	14	11	3	2	-	-	-	3	2	24	102	130
147	Finegoldia magna	AP008971	1813	12	-	-	-	-	-	-	-	-	2	3	13	31	121
148	Geobacillus kaustophilus	BA000043	3540	26	6	5	3	2	3	-	-	-	5	6	28	84	104
149	Geobacillus thermodenitrificans	CP000557	3445	27	5	5	2	2	2	-	-	-	5	5	28	81	105
150	Heliobacterium modesticaldum	CP000930	3000	28	22	4	3	2	11	-	-	-	3	4	25	103	131
151	Lactobacillus acidophilus	CP000033	1864	8	-	1	-	1	-	-	-	-	1	1	8	20	97
152	Lactobacillus brevis	CP000416	2218	10	-	2	-	3	-	-	-	-	2	1	10	28	96
153	Lactobacillus casei	CP000423	2771	15	-	-	-	-	-	-	-	-	1	1	17	34	84
154	Lactobacillus delbrueckii	CR954253	1562	6	-	3	-	-	-	-	-	-	2	1	6	18	109
155	Lactobacillus fermentum	AP008937	1843	5	-	-	-	-	-	-	-	-	1	1	6	13	76
156	Lactobacillus gasseri	CP000413	1755	5	-	-	-	-	-	-	-	-	1	1	5	12	77
157	Lactobacillus helveticus	CP000517	1610	4	-	-	-	-	-	-	-	-	1	1	4	10	77
158	Lactobacillus johnsonii	AE017198	1821	9	-	-	-	-	-	-	-	-	1	1	9	20	99
159	Lactobacillus plantarum	AL935263	3059	14	-	3	-	5	-	-	-	-	3	1	15	41	83
160	Lactobacillus reuteri	CP000705	1900	7	-	1	-	2	-	-	-	-	1	1	9	21	97
161	Lactobacillus sakei	CR936503	1879	9	-	-	-	-	-	-	-	-	1	1	10	21	98
162	Lactobacillus salivarius	CP000233	2017	8	-	1	-	1	-	-	-	-	-	1	9	20	89
163	Lactococcus lactis	AE005176	2321	7	-	-	-	-	-	-	-	-	1	1	7	16	64
164	Leuconostoc citreum	DQ489736	1820	7	-	1	-	1	-	-	-	-	1	1	7	23	106
165	Leuconostoc mesenteroides	CP000414	2005	10	-	1	-	1	-	-	-	-	1	1	10	24	99
166	Listeria innocua	AL592022	2968	15	2	3	-	3	-	-	-	-	2	3	18	46	92
167	Listeria monocytogenes	AL591824	2846	15	2	3	-	3	-	-	-	-	2	3	15	43	93
168	Listeria welshimeri	AM263198	2774	16	2	4	-	3	-	-	-	-	2	3	19	49	102
169	Lysinibacillus sphaericus	CP000817	4771	47	41	10	8	3	3	-	-	-	5	6	53	180	113
170	Moorella thermoacetica	CP000232	2465	14	6	8	-	1	10	-	-	-	3	4	15	61	125
171	Natranaerobius thermophilus	CP001034	2906	15	13	11	-	-	15	-	2	-	6	4	23	90	128
172	Oceanobacillus iheyensis	BA000028	3500	19	8	2	1	1	2	-	-	-	4	4	21	62	90
173	Oenococcus oeni	CP000411	1691	6	-	1	-	1	-	-	-	-	1	1	6	16	95
174	Pediococcus pentosaceus	CP000422	1755	8	-	1	-	4	-	-	-	-	1	1	9	24	112
175	Pelotomaculum thermopropionicum	AP009389	2920	20	13	8	-	1	14	-	2	-	2	4	25	87	125
176	Staphylococcus aureus	BA000018	2624	17	-	1	-	-	-	-	-	-	2	2	17	39	96
177	Staphylococcus epidermidis	AE015929	2419	15	-	1	-	-	-	-	-	-	2	2	16	36	100
178	Staphylococcus haemolyticus	AP006716	2676	16	-	1	-	-	-	-	-	-	1	2	15	35	89
179	Staphylococcus saprophyticus	AP008934	2514	11	-	1	-	-	-	-	-	-	1	2	11	26	80
180	Streptococcus agalactiae	AE009948	2124	18	-	-	-	-	-	-	-	-	1	1	20	40	118
181	Streptococcus equi	CP001129	1893	13	-	-	-	-	-	-	-	-	1	1	15	30	115
182	Streptococcus gordonii	CP000725	2051	15	-	-	-	-	-	-	-	-	1	1	16	33	112
183	Streptococcus mutans	AE014133	1960	14	-	-	-	-	-	-	-	-	1	1	14	30	112
184	Streptococcus pneumoniae	AE005672	2094	13	-	-	-	-	-	-	-	-	4	1	14	32	109
185	Streptococcus pyogenes	AE004092	1697	12	-	-	-	-	-	-	-	-	1	1	12	26	119
186	Streptococcus sanguinis	CP000387	2270	14	-	-	-	-	-	-	-	-	1	1	15	31	99
187	Streptococcus suis	CP000407	2186	10	-	-	-	-	-	-	-	-	1	1	12	23	88
188	Streptococcus thermophilus	CP000024	1915	9	-	-	-	-	-	-	-	-	4	1	10	24	103
189	Symbiobacterium thermophilum	AP006840	3337	27	13	6	3	-	4	-	-	-	1	3	33	90	114
190	Syntrophomonas wolfei	CP000448	2504	19	9	8	-	-	18	-	1	-	4	4	20	83	138
191	Thermoanaerobacter pseudethanolicus	CP000924	2243	8	5	3	-	1	7	-	-	-	2	3	11	41	114
192	Thermoanaerobacter sp. X514	CP000923	2349	12	3	3	-	1	9	-	-	-	3	3	15	51	120
193	Thermoanaerobacter tengcongensis	AE008691	2588	17	9	5	1	-	6	-	-	-	3	4	18	63	121
	Proteobacteria	GenBank	All	HisK	MCP	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	STYK	PP2C	RRs	Total	IQ
	Alpha-proteobacteria	GenBank	All	HisK	MCP	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	STYK	PP2C	RRs	Total	IQ
194	Acidiphilium cryptum	CP000697	3559	17	11	5	4	-	-	-	1	-	2	1	21	71	95
195	Agrobacterium tumefaciens	AE008688	5402	53	20	14	13	1	1	-	3	-	2	1	55	163	95
196	Anaplasma marginale	CP000030	949	3	-	1	-	-	-	-	-	-	1	-	2	7	112
197	Anaplasma phagocytophilum	CP000235	1264	3	-	1	-	-	-	-	-	-	1	-	2	7	83
198	Azorhizobium caulinodans	AP009384	4717	46	42	24	10	4	1	-	1	-	6	3	55	189	116
199	Bartonella bacilliformis	CP000524	1283	10	-	-	1	-	-	-	-	-	1	-	12	23	141
200	Bartonella henselae	BX897699	1488	11	-	-	1	-	-	-	-	-	1	-	11	24	128
201	Bartonella quintana	BX897700	1142	11	-	-	1	-	-	-	-	-	1	-	11	24	155
202	Bartonella tribocorum	AM260525	2092	11	-	-	1	-	-	-	-	-	1	-	11	24	94
203	Beijerinckia indica	CP001016	3784	37	4	1	1	1	-	-	1	-	2	-	37	80	95
204	Bradyrhizobium japonicum	BA000040	8317	92	35	12	23	4	3	-	37	-	4	2	90	302	83
205	Bradyrhizobium sp. BTAi1	CP000494	7622	91	60	15	15	3	4	-	12	-	3	1	75	266	85
206	Bradyrhizobium sp. ORS278	CU234118	6717	80	48	15	15	3	2	-	15	-	4	1	67	239	93
207	Brucella abortus	AE017223	3085	20	-	2	2	2	-	-	-	-	1	-	21	49	91
208	Brucella canis	CP000872	3251	21	-	6	3	2	-	-	-	-	1	-	19	51	88
209	Brucella melitensis	AE008917	3198	22	-	6	3	2	-	-	-	-	1	-	21	56	94
210	Brucella ovis	CP000709	2890	20	-	3	3	-	-	-	-	-	1	-	20	46	95
211	Brucella suis	AE014291	3271	21	-	5	3	2	-	-	-	-	2	-	21	54	90
212	Candidatus Pelagibacter ubique	CP000084	1354	5	-	-	-	-	-	-	-	-	1	4	5	15	114
213	Caulobacter crescentus	AE005673	3737	62	18	4	7	3	-	-	3	-	2	-	43	142	125
214	Caulobacter sp. K31	CP000927	5438	79	16	3	4	3	-	-	-	-	6	-	58	156	92
215	Dinoroseobacter shibae	CP000830	4187	29	-	2	1	1	-	-	-	-	2	1	28	64	74
216	Ehrlichia canis	CP000107	925	3	-	1	-	-	-	-	-	-	1	-	2	7	114
217	Ehrlichia chaffeensis	CP000236	1105	3	-	1	-	-	-	-	-	-	1	-	2	7	97
218	Ehrlichia ruminantium	CR767821	888	3	-	2	-	-	-	-	-	-	1	-	2	8	125
219	Erythrobacter litoralis	CP000157	3011	23	2	3	7	1	-	-	-	-	5	-	23	64	107
220	Gluconacetobacter diazotrophicus	AM889285	3852	21	9	-	-	-	-	-	2	-	2	-	28	85	96
221	Gluconobacter oxydans	CP000009	2664	16	3	2	4	1	-	-	1	-	2	-	19	48	105
222	Granulibacter bethesdensis	CP000394	2437	19	-	-	-	-	-	-	1	-	1	-	20	41	106
223	Hyphomonas neptunium	CP000158	3505	28	-	10	9	2	-	-	-	-	8	1	25	83	105
224	Jannaschia sp. CCS1	CP000264	4283	22	4	2	8	2	-	-	2	-	5	4	24	73	78
225	Magnetospirillum magneticum	AP007255	4559	104	65	29	17	10	16	-	7	-	10	9	77	344	150
226	Maricaulis maris	CP000449	3063	36	8	7	5	3	-	-	1	-	1	1	36	98	127
227	Mesorhizobium loti	BA000012	7275	62	1	16	16	2	1	-	12	-	3	2	55	170	68
228	Mesorhizobium sp. BNC1	CP000390	4543	32	1	4	7	1	-	-	-	-	2	-	34	81	78
229	Methylobacterium chloromethanicum	CP001298	5516	95	32	16	18	5	7	-	6	-	5	3	71	240	112
230	Methylobacterium extorquens	CP000908	4829	82	27	17	14	4	6	-	5	-	4	1	71	213	120
231	Methylobacterium populi	CP001029	5365	104	28	18	11	3	4	-	8	-	4	1	74	237	115
232	Methylobacterium radiotolerans	CP001001	6431	112	48	10	20	4	6	-	15	-	5	3	88	287	106
233	Methylobacterium sp. 4-46	CP000943	6692	101	40	12	17	1	5	-	21	-	5	3	82	268	99
234	Methylocella silvestris	CP001280	3818	40	1	5	4	-	-	-	3	-	6	2	44	101	106
235	Neorickettsia sennetsu	CP000237	932	3	-	1	-	1	-	-	-	-	1	-	1	7	114
236	Nitrobacter hamburgensis	CP000319	4326	41	4	6	5	3	1	-	1	-	2	-	36	99	93
237	Nitrobacter winogradskyi	CP000115	3122	26	2	4	4	2	1	-	2	-	2	-	26	69	107
238	Novosphingobium aromaticivorans	CP000248	3324	33	5	1	7	1	1	-	1	-	2	1	33	85	111
239	Ochrobactrum anthropi	CP000758	4799	32	-	13	6	-	-	-	-	-	1	-	30	78	70
240	Oligotropha carboxidovorans	CP001196	3722	31	10	13	7	1	1	-	1	-	1	-	32	97	107
241	Orientia tsutsugamushi Boryong	AM494475	1182	38	-	1	-	1	-	-	-	-	1	-	2	31	164
242	Orientia tsutsugamushi str. Ikeda	AP008981	1967	29	-	1	-	1	-	-	-	-	1	-	2	34	118
243	Paracoccus denitrificans	CP000489	5077	34	-	2	-	2	-	-	1	-	2	2	37	80	66
244	Parvibaculum lavamentivorans	CP000774	3636	42	-	4	3	2	-	-	-	-	2	1	38	93	107
245	Phenylobacterium zucineum	CP000747	3854	56	8	4	3	2	-	-	1	-	2	-	47	117	112
246	Rhizobium etli	CP000133	5963	55	27	14	21	-	1	-	22	-	3	1	64	209	98
247	Rhizobium leguminosarum	AM236086	7150	61	28	16	22	-	3	-	29	-	3	2	65	229	84
248	Rhodobacter sphaeroides	CP000143	4126	45	11	9	7	-	-	-	-	-	6	2	49	129	110
249	Rhodopseudomonas palustris	BX571963	4813	66	29	22	14	4	2	-	7	-	5	1	48	198	117
250	Rhodospirillum centenum	CP000613	4002	55	33	8	6	2	2	-	5	-	3	-	51	161	125
251	Rhodospirillum rubrum	CP000230	3841	55	50	21	15	4	2	-	1	-	4	1	48	201	140
252	Rickettsia akari	CP000847	1259	3	-	1	-	1	-	-	-	-	1	-	3	10	101
253	Rickettsia bellii	CP000087	1429	5	-	1	-	1	-	-	-	-	1	-	3	11	93
254	Rickettsia canadensis	CP000409	1093	3	-	1	-	1	-	-	-	-	1	-	3	9	110
255	Rickettsia conorii	AE006914	1374	5	-	1	-	1	-	-	-	-	1	-	3	11	97
256	Rickettsia felis	CP000053	1532	5	-	1	-	1	-	-	-	-	1	-	3	11	86
257	Rickettsia massiliae	CP000683	980	4	-	1	-	1	-	-	-	-	1	-	3	6	101
258	Rickettsia prowazekii	AJ235269	835	4	-	1	-	1	-	-	-	-	1	-	3	10	142
259	Rickettsia rickettsii	CP000766	1384	4	-	1	-	1	-	-	-	-	1	-	3	9	87
260	Rickettsia typhi	AE017197	838	4	-	1	-	1	-	-	-	-	1	-	3	10	142
261	Roseobacter denitrificans	CP000362	4129	25	6	2	6	1	-	-	3	-	2	1	29	75	83
262	Silicibacter pomeroyi	CP000031	4252	23	-	4	1	1	-	-	11	-	2	2	24	68	75
263	Silicibacter sp. TM1040	CP000377	3864	40	19	5	6	2	-	-	7	-	2	2	32	115	111
264	Sinorhizobium medicae	CP000738	6213	51	9	5	13	1	-	-	25	-	1	1	62	162	81
265	Sinorhizobium meliloti	AL591688	6205	48	9	6	11	2	-	-	28	-	2	1	56	163	81
266	Sphingomonas wittichii	CP000699	5345	45	5	12	7	1	1	-	2	-	3	2	50	126	83
267	Sphingopyxis alaskensis	CP000356	3195	19	3	6	6	1	-	-	1	-	1	-	25	62	99
268	Wolbachia endosymbiont of Culex quinquefasciatus Pel	AM999887	1275	2	-	1	-	-	-	-	-	-	1	-	1	5	65
269	Wolbachia endosymbiont of Drosophila melanogaster	AE017196	1195	2	-	1	-	-	-	-	-	-	1	-	1	5	72
270	Wolbachia endosymbiont strain TRS of Brugia malayi	AE017321	805	2	-	1	-	-	-	-	-	-	1	-	1	5	111
271	Xanthobacter autotrophicus	CP000781	5035	49	-	11	7	-	-	-	1	-	5	3	51	124	89
272	Zymomonas mobilis	AE008692	1998	15	3	2	2	1	-	-	-	-	1	-	13	37	121
	Beta-proteobacteria	GenBank	All	HisK	MCP	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	STYK	PP2C	RRs	Total	IQ
273	Acidovorax citrulli	CP000512	4709	58	40	23	17	4	2	-	3	-	6	6	53	210	122
274	Acidovorax sp. JS42	CP000539	4155	32	19	13	9	3	3	-	-	-	5	3	35	120	106
275	Aromatoleum aromaticum	CR555306	4590	41	2	7	19	4	5	-	1	-	7	4	42	132	101
276	Azoarcus sp. BH72	AM406670	3989	63	24	23	24	4	8	-	3	-	13	7	57	226	142
277	Bordetella avium	AM167904	3381	22	10	8	6	4	1	-	-	-	2	1	27	83	108
278	Bordetella bronchiseptica	BX470250	4994	25	8	10	5	4	2	-	-	-	4	1	32	91	74
279	Bordetella parapertussis	BX470249	4185	22	6	8	5	4	2	-	-	-	4	1	28	80	85
280	Bordetella pertussis	BX470248	3436	18	5	5	2	1	1	-	-	-	3	1	22	58	89
281	Bordetella petrii	AM902716	5027	29	7	-	2	-	-	-	-	-	5	1	34	77	65
282	Burkholderia ambifaria	CP000440	6617	50	18	13	7	7	1	-	1	1	5	-	58	161	74
283	Burkholderia cenocepacia	CP000458	6477	50	21	13	5	6	2	-	-	1	4	-	64	166	78
284	Burkholderia mallei	CP000011	4764	36	17	4	4	4	2	-	-	-	3	-	35	105	86
285	Burkholderia multivorans	CP000869	6259	55	16	9	7	6	-	-	-	2	2	-	61	211	93
286	Burkholderia phymatum	CP001043	7496	87	28	19	18	10	1	-	3	1	5	3	88	257	85
287	Burkholderia phytofirmans	CP001052	7241	76	27	18	16	8	3	-	-	1	6	2	87	241	85
288	Burkholderia pseudomallei	BX571965	5728	45	21	5	5	6	2	-	-	1	4	-	36	125	76
289	Burkholderia sp. 383	CP000150	7717	62	18	14	7	7	1	-	3	1	4	-	73	190	67
290	Burkholderia thailandensis	CP000086	5634	46	20	6	4	4	2	-	1	1	4	-	56	144	85
291	Burkholderia vietnamiensis	CP000616	7617	63	26	21	10	8	1	-	-	1	3	-	68	199	71
292	Burkholderia xenovorans	CP000271	8702	46	33	15	17	12	-	-	1	1	6	2	65	198	57
293	Chromobacterium violaceum	AE016825	4407	50	42	27	16	10	11	-	-	-	4	4	49	213	129
294	Cupriavidus taiwanensis	CU633749	5897	55	13	11	6	2	1	-	3	1	6	2	62	158	85
295	Dechloromonas aromatica	CP000089	4171	103	25	29	28	3	15	-	3	-	9	7	76	298	151
296	Delftia acidovorans	CP000884	6040	75	31	24	17	6	6	-	2	-	6	6	69	242	104
297	Herminiimonas arsenicoxydans	CU207211	3325	36	13	20	14	2	3	-	-	-	3	3	41	134	134
298	Janthinobacterium sp. Marseille	CP000269	3697	45	21	20	13	4	2	-	2	-	4	4	54	166	134
299	Leptothrix cholodnii	CP001013	4363	74	25	20	24	-	8	-	3	-	11	5	66	233	134
300	Methylibium petroleiphilum	CP000555	4449	53	13	11	11	1	3	-	1	-	10	4	47	150	110
301	Methylobacillus flagellatus	CP000284	2753	27	7	9	13	5	2	-	2	-	5	3	37	110	143
302	Neisseria gonorrhoeae	AE004969	2002	4	-	-	-	-	-	-	-	-	1	-	2	7	37
303	Neisseria meningitidis	AE002098	2079	5	-	-	-	-	-	-	-	-	1	-	5	11	56
304	Nitrosomonas europaea	AL954747	2461	15	3	2	4	5	-	-	3	-	2	-	16	50	115
305	Nitrosomonas eutropha	CP000450	2550	15	3	3	4	3	1	-	2	-	2	-	16	49	110
306	Nitrosospira multiformis	CP000103	2805	24	1	6	11	3	1	-	-	-	2	1	22	71	119
307	Polaromonas naphthalenivorans	CP000529	4929	66	1	-	1	-	-	-	2	-	10	4	50	130	93
308	Polaromonas sp. JS666	CP000316	5453	49	4	3	3	1	-	-	4	-	7	5	58	134	84
309	Polynucleobacter necessarius	CP000655	2077	8	-	3	-	-	2	-	-	-	2	-	8	23	93
310	Ralstonia eutropha	CP000090	6446	59	23	17	11	2	3	-	7	1	3	3	65	194	86
311	Ralstonia metallidurans	CP000352	6319	53	16	18	13	10	2	-	-	1	3	2	84	202	90
312	Ralstonia pickettii	CP001068	4952	54	15	12	14	4	3	-	-	1	5	1	58	165	105
313	Ralstonia solanacearum	AL646052	5116	44	22	12	10	4	2	-	-	1	3	1	62	161	100
314	Rhodoferax ferrireducens	CP000267	4418	63	24	25	30	-	14	-	1	-	7	3	69	236	134
315	Thiobacillus denitrificans	CP000116	2827	31	7	15	16	4	2	-	2	-	6	2	32	117	143
316	Verminephrobacter eiseniae	CP000542	4947	19	3	4	4	1	-	-	-	-	2	2	23	57	51
	Gamma-proteobacteria	GenBank	All	HisK	MCP	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	STYK	PP2C	RRs	Total	IQ
317	Acidithiobacillus ferrooxidans	CP001132	2826	13	-	-	3	-	-	-	-	-	1	3	16	37	86
318	Acinetobacter baumannii	CP000521	3368	17	1	7	3	2	-	-	2	-	3	1	18	51	84
319	Acinetobacter sp. ADP1	CR543861	3325	18	-	7	3	1	-	-	1	-	6	1	18	55	89
320	Actinobacillus pleuropneumoniae	CP000569	2012	5	-	-	-	-	-	1	-	-	1	-	5	12	64
321	Actinobacillus succinogenes	CP000746	2079	5	-	-	-	-	-	1	-	-	1	-	5	12	60
322	Aeromonas hydrophila	CP000462	4122	46	43	32	13	10	14	1	-	1	4	2	48	214	136
323	Aeromonas salmonicida	CP000644	4437	34	33	31	10	7	10	1	-	1	2	2	38	169	117
324	Alcanivorax borkumensis	AM286690	2755	30	1	9	3	-	1	-	2	-	6	1	29	82	128
325	Aliivibrio salmonicida	FM178379	3911	29	15	25	6	5	5	1	-	1	5	4	30	125	114
326	Alkalilimnicola ehrlichei	CP000453	2865	25	5	23	18	3	1	-	1	-	3	2	32	113	140
327	Alteromonas macleodii	CP001103	4072	54	16	25	22	5	7	1	2	-	4	3	52	191	131
328	Baumannia cicadellinicola	CP000238	595	-	-	-	-	-	-	-	-	-	-	-	-	0	0
329	Buchnera aphidicola	BA000003	574	-	-	-	-	-	-	-	-	-	-	-	-	0	0
330	Candidatus Blochmannia floridanus	BX248583	583	-	-	-	-	-	-	-	-	-	1	-	-	1	0
331	Candidatus Blochmannia pennsylvanicus	CP000016	610	-	-	-	-	-	-	-	-	-	1	-	-	1	0
332	Candidatus Carsonella ruddii	AP009180	182	-	-	-	-	-	-	-	-	-	-	-	-	0	0
333	Candidatus Ruthia magnifica	CP000488	976	2	-	-	-	-	-	-	-	-	2	1	3	8	116
334	Candidatus Vesicomyosocius okutanii	AP009247	937	2	-	-	-	-	-	-	-	-	2	1	3	8	120
335	Cellvibrio japonicus	CP000934	3754	38	16	20	21	3	5	1	3	-	6	7	36	157	130
336	Chromohalobacter salexigens	CP000285	3298	21	13	11	9	2	2	-	-	-	3	2	29	92	116
337	Citrobacter koseri	CP000822	5026	33	14	10	7	12	-	1	-	-	-	-	37	114	85
338	Colwellia psychrerythraea	CP000083	4910	56	23	34	26	5	3	-	-	-	9	2	59	217	119
339	Coxiella burnetii	AE016828	2046	7	-	-	-	-	-	-	1	-	4	-	8	20	87
340	Dichelobacter nodosus	CP000513	1280	6	1	-	-	1	-	-	-	-	1	-	9	16	123
341	Cronobacter sakazakii	CP000783	4434	26	26	12	9	12	-	1	-	-	2	2	33	124	101
342	Enterobacter sp. 638	CP000653	4240	30	18	16	10	10	1	1	-	-	-	-	29	115	102
343	Erwinia carotovora	BX950851	4472	28	36	13	4	7	1	1	-	1	2	1	28	122	100
344	Erwinia tasmaniensis	CU468135	3622	22	12	5	4	5	-	1	-	-	2	2	26	79	99
345	Escherichia coli K12	U00096	4132	30	5	12	7	10	-	1	-	-	2	-	32	99	97
346	Escherichia coli O157:H7	BA000007	5253	30	5	12	7	9	-	1	-	-	2	-	33	100	74
347	Escherichia fergusonii	CU928158	4266	29	3	12	8	8	-	1	-	-	2	-	36	102	95
348	Francisella novicida	CP000439	1719	2	-	-	2	-	-	-	-	-	1	-	2	8	59
349	Francisella philomiragia	CP000937	1915	3	-	-	-	-	-	-	-	-	1	-	4	9	54
350	Francisella tularensis	AJ749949	1804	2	-	-	-	-	-	-	-	-	1	-	2	5	31
351	Haemophilus ducreyi	AE017143	1717	1	-	-	-	-	-	1	-	-	1	-	3	6	45
352	Haemophilus influenzae	L42023	1711	4	-	-	-	-	-	1	-	-	1	-	6	12	80
353	Haemophilus somnus	CP000436	1792	1	-	-	-	-	-	1	-	-	2	-	3	7	48
354	Hahella chejuensis	CP000155	6778	80	35	31	33	6	9	1	4	-	20	12	87	318	106
355	Halorhodospira halophila	CP000544	2407	27	12	10	9	3	5	-	-	-	3	3	20	93	148
356	Idiomarina loihiensis	AE017340	2640	26	15	16	17	3	1	-	-	-	2	1	28	109	147
357	Klebsiella pneumoniae 342	CP000964	5768	32	-	14	7	12	1	1	-	-	3	1	32	102	65
358	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	CP000647	5187	33	-	13	6	14	1	1	-	-	1	-	34	102	76
359	Legionella pneumophila	AE017354	2942	12	-	8	11	3	-	-	5	-	5	-	12	56	103
360	Mannheimia succiniciproducens	AE016827	2384	5	-	-	-	-	-	1	-	-	1	-	5	12	47
361	Marinobacter aquaeolei	CP000514	4272	43	21	30	19	5	8	1	1	-	3	3	42	177	123
362	Marinomonas sp. MWYL1	CP000749	4439	51	51	42	15	8	6	-	1	1	3	4	51	237	134
363	Methylococcus capsulatus	AE017282	2959	17	2	5	11	1	1	-	-	-	3	5	18	63	108
364	Nitrosococcus oceani	CP000127	2974	19	1	2	12	-	1	-	1	-	1	4	23	64	108
365	Pasteurella multocida	AE004439	2015	9	-	-	-	-	-	1	-	-	1	-	9	20	89
366	Photobacterium profundum	CR354531	5480	53	39	22	10	6	2	1	-	1	8	2	54	198	104
367	Photorhabdus luminescens	BX470251	4683	18	2	-	-	-	-	1	-	-	1	1	20	43	43
368	Proteus mirabilis	AM942759	3662	18	9	1	-	-	-	1	-	1	1	1	21	53	78
369	Pseudoalteromonas atlantica	CP000388	4281	55	10	33	27	3	5	-	2	-	6	3	48	192	127
370	Pseudoalteromonas haloplanktis	CR954246	3486	38	14	21	17	7	3	-	-	-	4	1	38	143	132
371	Pseudomonas aeruginosa	AE004091	5567	63	26	17	16	6	3	1	1	-	8	6	64	210	105
372	Pseudomonas entomophila	CT573326	5134	61	32	19	19	2	-	1	-	-	6	4	64	208	113
373	Pseudomonas fluorescens	CP000076	6137	80	42	21	19	10	4	1	-	-	5	3	78	263	106
374	Pseudomonas mendocina	CP000680	4594	51	30	28	20	4	6	1	1	-	5	6	52	204	123
375	Pseudomonas putida	AE015451	5350	67	27	19	17	3	2	1	-	-	5	3	67	211	109
376	Pseudomonas stutzeri	CP000304	4128	66	33	19	14	3	2	1	1	-	6	7	47	199	132
377	Pseudomonas syringae	AE016853	5608	69	48	16	19	2	1	1	-	-	6	4	63	231	109
378	Psychrobacter arcticus	CP000082	2120	13	1	-	1	-	-	-	-	-	3	1	14	33	109
379	Psychrobacter cryohalolentis	CP000323	2511	18	1	1	2	-	-	-	1	-	5	2	17	47	110
380	Psychrobacter sp. PRwf-1	CP000713	2385	13	1	-	-	-	-	-	-	-	4	1	14	30	92
381	Psychromonas ingrahamii	CP000510	3541	24	-	23	32	5	5	1	-	-	6	3	23	123	123
382	Saccharophagus degradans	CP000282	4008	61	13	25	18	2	9	1	3	-	11	8	53	204	136
383	Salmonella enterica serovar Paratyphi	CP000026	4093	26	6	6	7	8	-	1	-	-	1	-	33	88	92
384	Salmonella enterica serovar Typhi	AL513382	4758	30	6	5	7	9	-	1	-	-	3	1	32	94	80
385	Salmonella typhimurium LT2	AE006468	4527	32	9	5	7	8	-	1	-	-	1	-	33	96	86
386	Serratia proteamaculans	CP000826	4942	36	6	11	5	5	-	-	-	-	2	1	38	104	82
387	Shewanella amazonensis	CP000507	3645	45	29	44	24	5	8	1	1	-	3	-	48	208	147
388	Shewanella baltica	CP000563	4489	41	39	35	24	6	11	-	1	1	4	1	45	207	126
389	Shewanella denitrificans	CP000302	3754	28	19	34	22	4	8	-	1	-	7	1	35	159	130
390	Shewanella frigidimarina	CP000447	4029	39	24	33	30	-	8	1	1	1	6	3	42	190	132
391	Shewanella halifaxensis	CP000931	4278	36	18	31	18	4	5	1	1	1	5	4	42	166	119
392	Shewanella loihica	CP000606	3859	44	23	32	21	2	9	1	1	1	3	-	48	185	135
393	Shewanella oneidensis	AE014299	4467	46	26	30	22	5	9	1	1	1	7	1	48	197	124
394	Shewanella pealeana	CP000851	4241	38	19	30	17	4	5	1	1	1	5	4	44	166	120
395	Shewanella piezotolerans	CP000472	4933	43	23	27	17	3	6	1	1	1	6	4	47	178	109
396	Shewanella putrefaciens	CP000681	3972	39	37	21	21	4	6	1	1	1	3	-	44	177	130
397	Shewanella sediminis	CP000821	4497	57	37	53	21	2	18	1	1	1	5	3	58	256	136
398	Shewanella sp. ANA-3	CP000469	4360	44	36	36	23	5	9	1	1	1	4	2	45	207	129
399	Shewanella sp. MR-4	CP000446	3924	45	32	37	24	4	9	1	1	1	5	1	46	206	139
400	Shewanella sp. MR-7	CP000444	4014	43	33	32	23	5	6	1	1	1	5	1	45	196	134
401	Shewanella sp. W3-18-1	CP000503	4044	37	38	21	22	5	5	1	1	1	5	1	43	179	129
402	Shewanella woodyi	CP000961	4880	56	26	45	22	4	15	1	1	-	7	3	54	231	123
403	Shigella boydii	CP000036	4284	26	2	6	5	6	-	1	-	-	2	-	31	79	82
404	Shigella dysenteriae	CP000034	4497	22	2	7	2	5	-	1	-	-	2	-	27	68	70
405	Shigella flexneri	AE005674	4441	25	4	6	2	6	-	1	-	-	2	-	27	73	75
406	Shigella sonnei	CP000038	4461	29	4	10	5	5	-	1	-	-	1	-	31	86	82
407	Sodalis glossinidius	AP008232	2516	10	-	2	1	1	-	1	-	-	2	-	15	32	90
408	Stenotrophomonas maltophilia	AM743169	4386	60	12	18	10	3	2	-	1	-	4	1	62	173	119
409	Thiomicrospira crunogena	CP000109	2196	20	14	24	17	6	3	-	-	-	2	1	22	109	165
410	Vibrio cholerae	AE003852	3835	43	45	31	10	12	9	1	-	-	1	1	43	196	139
411	Vibrio fischeri	CP000020	3802	36	43	29	9	10	2	1	-	-	5	2	36	173	133
412	Vibrio harveyi	CP000789	6055	42	25	31	12	14	5	-	-	1	4	1	45	178	88
413	Vibrio parahaemolyticus	BA000031	4832	50	30	28	16	13	5	1	-	1	6	2	52	204	118
414	Vibrio splendidus	FM954972	4431	49	31	27	18	7	10	1	-	-	5	1	47	192	123
415	Vibrio vulnificus	AE016795	5024	51	52	46	20	13	13	1	-	-	4	3	50	253	124
416	Wigglesworthia glossinidia	BA000021	617	-	-	-	-	-	-	-	-	-	1	-	1	2	92
417	Xanthomonas axonopodis	AE008923	4427	61	21	20	10	4	3	-	-	-	9	4	49	182	121
418	Xanthomonas campestris	AE008922	4181	55	20	21	10	4	3	-	-	-	5	3	49	171	123
419	Xanthomonas oryzae	AE013598	4637	42	10	12	10	2	3	-	-	-	7	3	42	131	100
420	Xylella fastidiosa	AE003849	2832	14	1	1	2	1	1	-	-	-	2	1	16	39	88
421	Yersinia enterocolitica	AM286415	4051	30	12	10	5	6	1	-	-	2	3	-	34	102	101
422	Yersinia pestis	AL590842	4067	23	6	2	3	3	-	1	-	1	3	-	31	73	83
423	Yersinia pseudotuberculosis	BX936398	4038	26	8	3	3	3	1	1	-	1	4	-	28	78	87
	Delta-proteobacteria	GenBank	All	HisK	MCP	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	STYK	PP2C	RRs	Total	IQ
424	Anaeromyxobacter dehalogenans	CP000251	4346	85	19	10	-	1	5	-	1	-	19	3	87	230	134
425	Anaeromyxobacter sp. Fw109-5	CP000769	4466	101	12	10	-	1	5	-	1	-	23	4	87	243	134
426	Anaeromyxobacter sp. K	CP001131	4457	90	19	10	-	1	4	-	-	-	20	3	88	235	133
427	Bdellovibrio bacteriovorus	BX842601	3587	49	20	5	-	1	6	-	4	-	5	4	39	133	126
428	Desulfatibacillum alkenivorans	CP001322	5252	131	21	23	2	2	11	-	8	1	12	17	83	310	130
429	Desulfococcus oleovorans	CP000859	3265	40	11	17	1	2	8	-	-	1	11	2	56	144	139
430	Desulfotalea psychrophila	CR522870	3234	31	21	20	3	1	10	-	1	-	4	6	26	123	132
431	Desulfovibrio desulfuricans	CP000112	3865	49	30	24	8	2	14	-	-	1	1	4	55	179	133
432	Desulfovibrio vulgaris	AE017285	3531	64	28	17	9	1	14	-	-	1	1	2	64	201	148
433	Geobacter bemidjiensis	CP001124	4018	126	35	14	7	1	13	-	1	-	2	5	92	295	154
434	Geobacter lovleyi	CP001089	3685	97	29	30	13	4	12	-	2	-	3	6	82	278	160
435	Geobacter metallireducens	CP000148	3634	83	18	13	6	1	12	-	2	-	2	6	63	206	147
436	Geobacter sulfurreducens	AE017180	3446	92	33	20	8	1	10	-	-	-	1	3	74	242	160
437	Geobacter uraniireducens	CP000698	4357	97	26	17	1	2	15	-	1	1	3	7	97	265	141
438	Lawsonia intracellularis	AM180252	1344	5	3	2	-	-	1	-	-	-	-	1	9	21	132
439	Myxococcus xanthus	CP000113	7331	140	21	18	-	2	6	-	12	-	102	5	120	426	113
440	Pelobacter carbinolicus	CP000142	3353	34	15	21	15	-	5	-	1	-	1	3	40	135	134
441	Pelobacter propionicus	CP000482	3576	74	21	20	10	2	9	-	-	-	3	3	52	194	145
442	Sorangium cellulosum	AM746676	9384	149	5	8	1	-	2	-	19	-	323	29	113	642	109
443	Syntrophobacter fumaroxidans	CP000478	4064	73	1	7	2	-	6	-	6	-	9	6	59	169	126
444	Syntrophus aciditrophicus	CP000252	3168	26	5	7	-	-	7	-	3	-	-	3	29	80	113
	Epsilon-proteobacteria	GenBank	All	HisK	MCP	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	STYK	PP2C	RRs	Total	IQ
445	Arcobacter butzleri	CP000361	2259	37	29	14	10	1	6	-	1	-	1	-	40	136	173
446	Campylobacter concisus	CP000792	1985	11	9	5	6	-	-	-	-	-	-	-	13	45	131
447	Campylobacter curvus	CP000767	1931	13	8	5	6	-	-	-	-	-	-	-	15	47	136
448	Campylobacter fetus	CP000487	1719	12	14	6	3	1	-	-	-	-	-	-	14	50	151
449	Campylobacter hominis	CP000776	1687	8	-	-	1	-	-	-	-	-	-	-	8	16	96
450	Campylobacter jejuni	AL111168	1623	7	10	1	-	-	-	-	-	-	-	-	10	28	127
451	Helicobacter acinonychis	AM260522	1660	4	4	-	-	-	-	-	-	-	-	-	9	17	100
452	Helicobacter hepaticus	AE017125	1875	5	9	1	-	-	-	-	-	-	-	-	10	25	107
453	Helicobacter pylori	AE000511	1576	4	4	-	-	-	-	-	-	-	1	1	9	19	111
454	Nitratiruptor sp. SB155-2	AP009178	1843	15	8	12	22	-	-	-	-	-	3	2	17	80	167
455	Sulfurimonas denitrificans	CP000153	2097	37	13	22	16	-	3	-	1	-	1	1	40	134	180
456	Sulfurovum sp. NBC37-1	AP009179	2438	30	-	6	12	1	-	-	1	-	2	2	27	81	140
457	Wolinella succinogenes	BX571656	2044	39	31	12	9	3	2	-	1	-	2	3	37	139	184
	Unclassified proteobacteria	GenBank	All	HisK	MCP	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	STYK	PP2C	RRs	Total	IQ
458	Magnetococcus sp. MC-1	CP000471	3716	100	33	25	17	1	16	-	13	-	7	10	57	279	160
	Spirochaetes	GenBank	All	HisK	MCP	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	STYK	PP2C	RRs	Total	IQ
459	Borrelia afzelii	CP000395	1215	4	5	1	-	1	1	-	-	1	-	-	5	19	137
460	Borrelia burgdorferi	AE001115	1639	4	5	1	-	1	1	-	-	1	-	-	4	17	101
461	Borrelia duttonii	CP000976	1305	4	5	1	-	1	1	-	-	1	-	1	5	19	130
462	Borrelia garinii	CP000013	932	4	5	1	-	1	1	-	-	1	-	-	5	18	161
463	Borrelia hermsii	CP000048	819	4	5	1	-	1	1	-	-	1	-	1	5	19	176
464	Borrelia recurrentis	CP000993	990	4	5	1	-	1	1	-	-	1	-	1	5	19	157
465	Borrelia turicatae	CP000049	818	4	5	1	-	1	1	-	-	1	-	1	5	20	179
466	Leptospira biflexa	CP000777	3600	65	26	6	5	4	3	-	25	-	1	39	37	215	150
467	Leptospira borgpetersenii	CP000348	2945	32	9	6	-	4	3	-	9	-	5	19	23	110	136
468	Leptospira interrogans	AE010300	4727	47	13	10	3	5	2	-	18	-	4	22	28	152	105
469	Treponema denticola	AE017226	2767	7	20	7	2	-	4	-	9	-	-	4	10	63	115
470	Treponema pallidum	AE000520	1036	1	4	1	-	-	3	-	1	-	-	3	3	16	144
	Tenericutes	GenBank	All	HisK	MCP	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	STYK	PP2C	RRs	Total	IQ
471	Acholeplasma laidlawii	CP000896	1380	2	-	9	4	1	1	-	1	-	-	-	3	21	129
472	Aster yellows witches'-broom phytoplasma	CP000061	693	-	-	-	-	-	-	-	-	-	-	-	-	0	0
473	Candidatus Phytoplasma australiense	AM422018	696	-	-	-	-	-	-	-	-	-	-	-	-	0	0
474	Candidatus Phytoplasma mali	CU469464	479	-	-	-	-	-	-	-	-	-	-	-	-	0	0
475	Mesoplasma florum	AE017263	682	-	-	-	-	-	-	-	-	-	1	1	-	2	82
476	Mycoplasma agalactiae	CU179680	742	-	-	-	-	-	-	-	-	-	-	1	-	1	0
477	Mycoplasma arthritidis	CP001047	631	-	-	-	-	-	-	-	-	-	1	1	-	2	90
478	Mycoplasma capricolum	CP000123	812	-	-	-	-	-	-	-	-	-	1	2	-	3	85
479	Mycoplasma gallisepticum	AE015450	726	-	-	-	-	-	-	-	-	-	1	1	-	2	76
480	Mycoplasma genitalium	L43967	484	-	-	-	-	-	-	-	-	-	1	1	-	2	116
481	Mycoplasma hyopneumoniae	AE017332	691	-	-	-	-	-	-	-	-	-	-	-	-	0	0
482	Mycoplasma mobile	AE017308	633	-	-	-	-	-	-	-	-	-	2	1	-	3	110
483	Mycoplasma mycoides	BX293980	1016	-	-	-	-	-	-	-	-	-	1	1	-	2	42
484	Mycoplasma penetrans	BA000026	1037	-	-	-	-	-	-	-	-	-	2	1	-	3	61
485	Mycoplasma pneumoniae	U00089	689	-	-	-	-	-	-	-	-	-	1	1	-	2	81
486	Mycoplasma pulmonis	AL445566	782	-	-	-	-	-	-	-	-	-	1	1	-	2	68
487	Mycoplasma synoviae	AE017245	672	-	-	-	-	-	-	-	-	-	1	1	-	2	84
488	Onion yellows phytoplasma	AP006628	754	-	-	-	-	-	-	-	-	-	-	-	-	0	0
489	Ureaplasma parvum	AF222894	614	-	-	-	-	-	-	-	-	-	1	1	-	2	93
490	Ureaplasma urealyticum	CP001184	646	-	-	-	-	-	-	-	-	-	1	1	-	2	88
	Thermotogae	GenBank	All	HisK	MCP	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	STYK	PP2C	RRs	Total	IQ
491	Fervidobacterium nodosum	CP000771	1750	10	8	14	1	-	8	-	1	-	-	4	9	55	154
492	Petrotoga mobilis	CP000879	1898	8	11	4	1	-	2	-	-	-	-	-	8	34	121
493	Thermosipho africanus	CP001185	1913	9	10	14	1	-	12	-	1	-	-	2	10	56	146
494	Thermosipho melanesiensis	CP000716	1879	9	14	13	1	-	12	-	1	-	-	4	11	64	154
495	Thermotoga lettingae	CP000812	2040	8	6	10	-	1	9	-	-	-	-	2	9	46	129
496	Thermotoga maritima	AE000512	1858	8	7	8	-	-	10	-	-	-	-	2	8	43	135
497	Thermotoga petrophila	CP000702	1785	7	6	8	-	-	9	-	-	-	-	2	8	41	137
498	Thermotoga sp. RQ2	CP000969	1819	8	6	8	-	-	7	-	-	-	-	2	8	39	133
	Verrucomicrobia	GenBank	All	HisK	MCP	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	STYK	PP2C	RRs	Total	IQ
499	Akkermansia muciniphila	CP001071	2138	5	-	-	-	-	-	-	-	-	-	3	5	13	61
500	Methylacidiphilum infernorum	CP000975	2472	9	-	-	-	-	-	-	-	-	-	1	11	21	71
501	Opitutus terrae	CP001032	4612	117	14	1	-	-	1	-	4	-	9	5	79	229	128
	Other bacterial phyla	GenBank	All	HisK	MCP	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	STYK	PP2C	RRs	Total	IQ
502	Fusobacterium nucleatum	AE009951	2066	7	-	-	-	-	-	-	1	-	-	1	8	17	78
503	Rhodopirellula baltica	BX119912	7325	46	-	7	2	1	6	-	3	1	60	3	52	181	70
504	Thermodesulfovibrio yellowstonii	CP001147	2033	32	11	5	-	2	5	-	3	-	1	-	35	92	164
	Archaea	GenBank	All	HisK	MCP	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	STYK	PP2C	RRs	Total	IQ
	Crenarchaeota	GenBank	All	HisK	MCP	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	STYK	PP2C	RRs	Total	IQ
505	Aeropyrum pernix	BA000002	1841	-	-	-	-	-	-	-	-	0*	5	-	-	6	38
506	Caldivirga maquilingensis	CP000852	1963	-	-	-	-	-	-	-	-	0*	5	-	-	6	31
507	Cenarchaeum symbiosum	DP000238	2017	-	-	-	-	-	-	-	2	-	5	1	-	6	29
508	Desulfurococcus kamchatkensis	CP001140	1471	-	-	-	-	-	-	-	-	0*	5	-	-	6	60
509	Hyperthermus butylicus	CP000493	1602	-	-	-	-	-	-	-	-	0*	5	-	-	7	59
510	Ignicoccus hospitalis	CP000816	1434	-	-	-	-	-	-	-	-	0*	6	-	-	7	70
511	Metallosphaera sedula	CP000682	2256	-	-	-	-	-	-	-	-	0*	10	-	-	11	48
512	Nitrosopumilus maritimus	CP000866	1795	9	-	-	-	-	-	-	4	-	-	-	10	19	103
513	Pyrobaculum aerophilum	AE009441	2605	-	-	-	-	-	-	-	-	0*	5	-	-	6	3
514	Pyrobaculum arsenaticum	CP000660	2299	-	-	-	-	-	-	-	-	0*	4	-	-	6	16
515	Pyrobaculum calidifontis	CP000561	2149	-	-	-	-	-	-	-	-	0*	4	-	-	6	22
516	Pyrobaculum islandicum	CP000504	1978	-	-	-	-	-	-	-	-	0*	5	-	-	6	31
517	Staphylothermus marinus	CP000575	1570	-	-	-	-	-	-	-	-	0*	5	-	-	6	54
518	Sulfolobus acidocaldarius	CP000077	2223	-	-	-	-	-	-	-	-	0*	10	-	-	11	49
519	Sulfolobus solfataricus	AE006641	2977	-	-	-	-	-	-	-	-	0*	8	-	-	9	10
520	Sulfolobus tokodaii	BA000023	2825	-	-	-	-	-	-	-	-	0*	12	-	-	13	34
521	Thermofilum pendens	CP000505	1876	-	-	-	-	-	-	-	-	0*	4	-	-	5	27
522	Thermoproteus neutrophilus	CP001014	1966	-	-	-	-	-	-	-	-	0*	5	-	-	7	39
	Euryarchaeaota	GenBank	All	HisK	MCP	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	STYK	PP2C	RRs	Total	IQ
523	Archaeoglobus fulgidus	AE000782	2420	14	2	-	-	-	-	-	-	0*	3	-	10	30	91
524	Candidatus Methanoregula boonei	CP000780	2450	54	4	-	-	-	-	-	-	0*	10	6	40	113	156
525	Haloarcula marismortui	AY596297	4240	59	17	-	-	-	-	-	-	0*	8	1	24	110	100
526	Halobacterium sp. NRC-1	AE004437	2622	13	17	-	-	-	-	-	-	0*	5	-	5	41	99
527	Haloquadratum walsbyi	AM180088	2646	7	-	-	-	-	-	-	-	0*	5	-	3	16	51
528	Methanobrevibacter smithii	CP000678	1793	-	-	-	-	-	-	-	-	0*	3	-	-	4	20
529	Methanocaldococcus jannaschii	L77117	1786	-	-	-	-	-	-	-	-	0*	4	-	-	5	32
530	Methanococcoides burtonii	CP000300	2273	30	1	-	-	-	-	-	-	0*	5	-	14	51	124
531	Methanococcus aeolicus	CP000743	1490	1	-	-	-	-	-	-	-	0*	4	-	1	8	73
532	Methanococcus maripaludis	BX950229	1722	3	4	-	-	-	-	-	-	0*	4	-	3	15	90
533	Methanococcus vannielii	CP000742	1678	5	4	-	-	-	-	-	-	0*	4	-	3	22	112
534	Methanocorpusculum labreanum	CP000559	1739	1	-	-	-	-	-	-	-	0*	5	1	1	10	69
535	Methanoculleus marisnigri	CP000562	2489	28	2	-	-	-	-	-	-	-	5	2	6	44	107
536	Methanopyrus kandleri	AE009439	1687	-	-	-	-	-	-	-	0*	0*	5	-	-	6	47
537	Methanosaeta thermophila	CP000477	1696	7	-	-	-	-	-	-	-	0*	4	1	4	16	95
538	Methanosarcina acetivorans	AE010299	4540	53	2	-	-	-	-	-	1	0*	5	-	15	77	75
539	Methanosarcina barkeri	CP000099	3625	26	1	-	-	-	-	-	-	0*	5	-	11	44	70
540	Methanosarcina mazei	AE008384	3371	33	3	-	-	-	-	-	-	0*	4	-	14	55	88
541	Methanosphaera stadtmanae	CP000102	1534	-	-	-	-	-	-	-	0*	0*	3	-	-	4	36
542	Methanospirillum hungatei	CP000254	3139	76	27	-	-	-	-	-	-	0*	9	6	56	175	153
543	Methanothermobacter thermautotrophicus	AE000666	1873	16	-	-	-	-	-	-	0*	0*	3	-	7	27	111
544	Natronomonas pharaonis	CR936257	2822	33	19	-	-	-	-	-	-	0*	6	-	10	69	117
545	Picrophilus torridus	AE017261	1535	-	-	-	-	-	-	-	-	-	5	-	-	5	47
546	Pyrococcus abyssi	AL096836	1896	1	5	-	-	-	-	-	-	0*	4	-	2	14	77
547	Pyrococcus furiosus	AE009950	2125	-	-	-	-	-	-	-	-	0*	5	-	-	7	31
548	Pyrococcus horikoshii	BA000001	1955	1	5	-	-	-	-	-	-	0*	4	-	2	14	74
549	Thermococcus kodakarensis	AP006878	2306	-	5	-	-	-	-	-	-	0*	4	-	2	13	54
550	Thermococcus onnurineus	CP000855	1976	1	4	-	-	-	-	-	-	0*	3	-	2	13	69
551	Thermoplasma acidophilum	AL139299	1481	-	-	-	-	-	-	-	-	-	4	-	-	4	39
552	Thermoplasma volcanium	BA000011	1499	-	-	-	-	-	-	-	-	-	4	1	-	5	49
553	Uncultured methanogenic archaeon RC-I	AM114193	3103	45	3	1	-	-	1	-	-	0*	8	-	14	73	111
	Other archaea	GenBank	All	HisK	MCP	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	STYK	PP2C	RRs	Total	IQ
554	Candidatus Korarchaeum cryptofilum	CP000968	1602	-	-	-	-	-	-	-	-	0*	-	-	-	1	0
555	Nanoarchaeum equitans	AE017199	535	-	-	-	-	-	-	-	-	-	3	-	-	3	127
No.	Organism	GenBank	All prot.	HisK	MCP	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	STYK	PP2C	RRs	All total	IQ
	Total no.			15883	4735	4001	2660	952	1198	65	866	147	3356	1460	14986
	% total			31.6%	9.4%	8.0%	5.3%	1.9%	2.4%	0.1%	1.7%	0.3%	6.7%	2.9%	29.8%

^a The numbers in the table are linked to protein lists, which are further linked to RefSeq and UniProt database entries, BLink outputs, and CDD and Pfam domain architectures. Numbers with asterisks indicate the presence of proteins with highly divergent and/or truncated domains, not included in the total count but listed at the end of the each protein list. Comments and corrections are welcome.