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. 2017 Sep:73:95-103.
doi: 10.1016/j.jbi.2017.07.015. Epub 2017 Jul 26.

Automatic identification of high impact articles in PubMed to support clinical decision making

Affiliations

Automatic identification of high impact articles in PubMed to support clinical decision making

Jiantao Bian et al. J Biomed Inform. 2017 Sep.

Abstract

Objectives: The practice of evidence-based medicine involves integrating the latest best available evidence into patient care decisions. Yet, critical barriers exist for clinicians' retrieval of evidence that is relevant for a particular patient from primary sources such as randomized controlled trials and meta-analyses. To help address those barriers, we investigated machine learning algorithms that find clinical studies with high clinical impact from PubMed®.

Methods: Our machine learning algorithms use a variety of features including bibliometric features (e.g., citation count), social media attention, journal impact factors, and citation metadata. The algorithms were developed and evaluated with a gold standard composed of 502 high impact clinical studies that are referenced in 11 clinical evidence-based guidelines on the treatment of various diseases. We tested the following hypotheses: (1) our high impact classifier outperforms a state-of-the-art classifier based on citation metadata and citation terms, and PubMed's® relevance sort algorithm; and (2) the performance of our high impact classifier does not decrease significantly after removing proprietary features such as citation count.

Results: The mean top 20 precision of our high impact classifier was 34% versus 11% for the state-of-the-art classifier and 4% for PubMed's® relevance sort (p=0.009); and the performance of our high impact classifier did not decrease significantly after removing proprietary features (mean top 20 precision=34% vs. 36%; p=0.085).

Conclusion: The high impact classifier, using features such as bibliometrics, social media attention and MEDLINE® metadata, outperformed previous approaches and is a promising alternative to identifying high impact studies for clinical decision support.

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Conflict of interest statement

Conflict of interest

None declared.

Figures

Figure 1
Figure 1
Method Steps
Figure 2
Figure 2
Average top 20 precision, top 20 mean average precision (MAP), top 20 mean reciprocal rank (MRR), precision, recall and F-measure, of the high impact classifier, Kilicoglu et al.’s high quality Naïve Bayes classifier and PubMed’s® relevance sort (Experiment #1).
Figure 3
Figure 3
Average top 20 precision, top 20 mean average precision (MAP), top 20 mean reciprocal rank (MRR), precision, recall and F-measure of the high impact classifier, and the all feature without Scopus citation count and Altmetric® score classifier (Experiment #2).

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