Entry - #616721 - CONGENITAL DISORDER OF GLYCOSYLATION, TYPE IIn; CDG2N - OMIM
# 616721

CONGENITAL DISORDER OF GLYCOSYLATION, TYPE IIn; CDG2N


Alternative titles; symbols

CDG IIn; CDGIIn


Phenotype-Gene Relationships

Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
Gene/Locus Gene/Locus
MIM number
4q24 Congenital disorder of glycosylation, type IIn 616721 AR 3 SLC39A8 608732
Clinical Synopsis
 
Phenotypic Series
 

INHERITANCE
- Autosomal recessive
GROWTH
Height
- Short stature
HEAD & NECK
Ears
- Hearing loss (1 patient)
Eyes
- Strabismus
- Astigmatism
- Nystagmus
- Poor visual fixation (in some patients)
SKELETAL
- Osteopenia (in some patients)
- Joint hypermobility (in some patients)
Skull
- Craniosynostosis (1 patient)
MUSCLE, SOFT TISSUES
- Hypotonia, profound
NEUROLOGIC
Central Nervous System
- Delayed psychomotor development, profound
- Intellectual disability, profound
- Delayed head control
- Inability to walk
- Inability to sit (in some patients)
- Seizures (in some patients)
- Cerebellar atrophy
- Cerebral atrophy (in some patients)
IMMUNOLOGY
- Recurrent infections (in some patients)
LABORATORY ABNORMALITIES
- Serum transferrin glycosylation defect in a type II pattern
- Decreased plasma zinc and manganese
- Increased urinary zinc and manganese (in some patients)
MISCELLANEOUS
- Onset at birth
MOLECULAR BASIS
- Caused by mutation in the solute carrier family 39 (zinc transporter), member 8 gene (SLC39A8, 608732.0001)
Congenital disorders of glycosylation, type II - PS212066 - 26 Entries
Location Phenotype Inheritance Phenotype
mapping key
Phenotype
MIM number
Gene/Locus Gene/Locus
MIM number
1q25.3 Congenital disorder of glycosylation, type IIv AR 3 619493 EDEM3 610214
1q42.13 Congenital disorder of glycosylation, type IIt AR 3 618885 GALNT2 602274
1q42.2 ?Congenital disorder of glycosylation, type IIq AR 3 617395 COG2 606974
2p13.1 Congenital disorder of glycosylation, type IIb AR 3 606056 MOGS 601336
2q21.1 Congenital disorder of glycosylation, type IIo AR 3 616828 CCDC115 613734
4q12 Congenital disorder of glycosylation, type IIk AR 3 614727 TMEM165 614726
4q24 Congenital disorder of glycosylation, type IIn AR 3 616721 SLC39A8 608732
5q31.1 ?Congenital disorder of glycosylation, type IIz AR 3 620201 CAMLG 601118
6q15 Congenital disorder of glycosylation, type IIf AR 3 603585 SLC35A1 605634
7p22.3 ?Congenital disorder of glycosylation, type IIy AR 3 620200 GET4 612056
7q22.3 Congenital disorder of glycosylation, type IIi AR 3 613612 COG5 606821
9p21.1 Congenital disorder of glycosylation, type IId AR 3 607091 B4GALT1 137060
11p11.2 Congenital disorder of glycosylation, type IIc AR 3 266265 SLC35C1 605881
11q12.3 ?Congenital disorder of glycosylation, type IIaa AR 3 620454 STX5 603189
11q23.3 Congenital disorder of glycosylation, type IIw AD 3 619525 SLC37A4 602671
13q14.11 Congenital disorder of glycosylation, type IIl AR 3 614576 COG6 606977
13q14.13 Congenital disorder of glycosylation, type IIbb AR 3 620546 COG3 606975
14q21.3 Congenital disorder of glycosylation, type IIa AR 3 212066 MGAT2 602616
16p12.2 Congenital disorder of glycosylation, type IIe AR 3 608779 COG7 606978
16q22.1 Congenital disorder of glycosylation, type IIh 3 611182 COG8 606979
16q22.1 Congenital disorder of glycosylation, type IIj AR 3 613489 COG4 606976
17q11.2 Congenital disorder of glycosylation, type IIp AR 3 616829 TMEM199 616815
17q25.1 Congenital disorder of glycosylation, type IIg AR 3 611209 COG1 606973
Xp11.4 Congenital disorder of glycosylation, type IIr XLR 3 301045 ATP6AP2 300556
Xp11.23 Congenital disorder of glycosylation, type IIm SMo, XLD 3 300896 SLC35A2 314375
Xq28 Immunodeficiency 47 XLR 3 300972 ATP6AP1 300197

TEXT

A number sign (#) is used with this entry because of evidence that congenital disorder of glycosylation type IIn (CDG2N) is caused by homozygous or compound heterozygous mutation in the SLC39A8 gene (608732) on chromosome 4q24.


Description

Congenital disorder of glycosylation type IIn (CDG2N) is an autosomal recessive severe multisystem developmental disorder characterized by delayed psychomotor development apparent from infancy, hypotonia, and variable additional features, such as short stature, seizures, visual impairment, and cerebellar atrophy. Serum transferrin analysis shows a CDG type II pattern (summary by Boycott et al., 2015 and Park et al., 2015).

For a discussion of genetic heterogeneity of CDG type II, see CDG2A (212066).


Clinical Features

Boycott et al. (2015) reported 6 patients of Hutterite descent, including 2 patients from a large kindred from the Dariusleut group and 4 patients from 3 consanguineous families from the Schmiedeleut group, with a severe multisystem developmental disorder. The patients ranged in age from 6 to 23 years. They all had profound psychomotor retardation with delayed head control, severe hypotonia, inability to walk, variable ability to sit independently, and profound intellectual disability. Other features included strabismus, short stature, and recurrent infections; 2 patients had osteopenia, and 2 had seizures. Two sibs from a consanguineous Egyptian family had a similar phenotype, with severely delayed psychomotor development, hypotonia and hyperreflexia. Brain imaging in all patients showed cerebellar atrophy; 1 patient also had cortical atrophy. Laboratory studies showed decreased levels of manganese (Mn) and zinc (Zn) in blood, whereas urine levels tended to be high, indicating renal wasting. In addition, Park et al. (2015) found that 3 of the patients reported by Boycott et al. (2015) had abnormal transferrin glycosylation patterns, with decreased tetrasialo-transferrin and increased trisialo-, monosialo- and disialo-transferrin in a type II pattern.

Park et al. (2015) reported 2 unrelated females with CDG2N. The first patient, born of unrelated German parents, was noted to have short stature, short limbs, and cutaneous syndactyly of the feet at birth. She presented at age 4 months with disproportionate dwarfism, craniosynostosis, absence of visual fixation, strabismus, and hearing impairment. She had a flat face and low-set ears, and brain imaging showed cerebral atrophy and enlarged ventricles with a normal cerebellum. Severe refractory seizures, associated with hypsarrhythmia on EEG, occurred up to 5 times a day. A few months later, she had episodic apnea/hypopnea and liver disease, both of which resolved. Serum and urinary manganese concentrations were undetectable, and serum transferrin analysis showed a pattern consistent with a type II congenital disorder of glycosylation, with increased amounts of asialo-, monosialo-, disialo-, and trisialo-transferrin compared to controls. The patient was treated with dietary galactose, which resulted in a dramatic improvement in the transferrin glycosylation defect, although the clinical benefits were unclear. The second patient was a 19-year-old who had short stature and severely delayed global development apparent in the first year of life. She was hypotonic, confined to a wheelchair without the ability to sit or walk without support, and had very poor speech. She had seizures as a child that remitted. Other features included hyperopia, astigmatism, strabismus, nystagmus, mild elbow and knee contractures, and cerebellar atrophy. Laboratory studies showed undetectable manganese and a type II CDG pattern of serum transferrin.


Inheritance

The transmission pattern of CDG2N in the families reported by Boycott et al. (2015) and Park et al. (2015) was consistent with autosomal recessive inheritance.


Molecular Genetics

In 6 patients of Hutterite descent and in 2 sibs, born of consanguineous Egyptian parents, with CDG2N, Boycott et al. (2015) identified the same homozygous missense mutation in the SLC39A8 gene (G38R; 608732.0001). The mutations, which were found by a combination of homozygosity mapping and whole-exome sequencing, segregated with the disorder in the families. Haplotype analysis did not suggest a founder effect between the Hutterite and Egyptian patients. Patient cells showed normal localization of the mutant protein, but blood levels of Zn and Mn were low and urine levels of these cations were high, suggesting renal wasting and consistent with the mutation causing a loss of transporter function. Functional studies of the variant were not performed.

In 2 unrelated patients with CDG2N, Park et al. (2015) identified compound heterozygous mutations in the SLC39A8 gene (608732.0001-608732.0004). The mutations in the first patient were found by whole-exome sequencing; mutations in the second patient were found by direct sequencing of the SLC39A8 gene in patients with unknown glycosylation defects. Functional studies of the variants were not performed, but the patients had no detectable serum or urinary manganese, consistent with a loss of transporter function. The findings linked a trace element deficiency to an inherited glycosylation disorder.


Animal Model

Galvez-Peralta et al. (2012) found that mice homozygous for a hypomorphic Slc39a8 allele had stunted growth, severe anemia, dysregulation of hematopoiesis, and failure of multiple organs, such as spleen, liver, kidney, and lung, to develop normally in utero, all of which ultimately resulted in neonatal lethality. Other features included malformed cranium, hypoplastic hind limbs, and underdeveloped eyes. The mutant mice had decreased zinc, iron, and manganese levels in multiple tissues. The findings indicated that Slc39a8 is indispensable for proper embryonic development, and highlighted the importance of zinc homeostasis during this period.


REFERENCES

  1. Boycott, K. M., Beaulieu, C. L., Kernohan, K. D., Gebril, O. H., Mhanni, A., Chudley, A. E., Redl, D., Qin, W., Hampson, S., Kury, S., Tetreault, M., Puffenberger, E. G., and 15 others. Autosomal-recessive intellectual disability with cerebellar atrophy syndrome caused by mutation of the manganese and zinc transporter gene SLC39A8. Am. J. Hum. Genet. 97: 886-893, 2015. [PubMed: 26637978, images, related citations] [Full Text]

  2. Galvez-Peralta, M., He, L., Jorge-Nebert, L. F., Wang, B., Miller, M. L., Eppert, B. L., Afton, S., Nebert, D. W. ZIP8 zinc transporter: indispensable role for both multiple-organ organogenesis and hematopoiesis in utero. PLoS One 7: e36055, 2012. Note: Electronic Article. [PubMed: 22563477, images, related citations] [Full Text]

  3. Park, J. H., Hogrebe, M., Gruneberg, M., DuChesne, I., von der Heiden, A. L., Reunert, J., Schlingmann, K. P., Boycott, K. M., Beaulieu, C. L., Mhanni, A. A., Innes, A. M., Hortnagel, K., and 12 others. SLC39A8 deficiency: a disorder of manganese transport and glycosylation. Am. J. Hum. Genet. 97: 894-903, 2015. [PubMed: 26637979, images, related citations] [Full Text]


Creation Date:
Cassandra L. Kniffin : 12/26/2015
carol : 12/29/2015
carol : 12/29/2015
carol : 12/29/2015
ckniffin : 12/28/2015

# 616721

CONGENITAL DISORDER OF GLYCOSYLATION, TYPE IIn; CDG2N


Alternative titles; symbols

CDG IIn; CDGIIn


SNOMEDCT: 1187171005;   ORPHA: 468699;   DO: 0070266;  


Phenotype-Gene Relationships

Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
Gene/Locus Gene/Locus
MIM number
4q24 Congenital disorder of glycosylation, type IIn 616721 Autosomal recessive 3 SLC39A8 608732

TEXT

A number sign (#) is used with this entry because of evidence that congenital disorder of glycosylation type IIn (CDG2N) is caused by homozygous or compound heterozygous mutation in the SLC39A8 gene (608732) on chromosome 4q24.


Description

Congenital disorder of glycosylation type IIn (CDG2N) is an autosomal recessive severe multisystem developmental disorder characterized by delayed psychomotor development apparent from infancy, hypotonia, and variable additional features, such as short stature, seizures, visual impairment, and cerebellar atrophy. Serum transferrin analysis shows a CDG type II pattern (summary by Boycott et al., 2015 and Park et al., 2015).

For a discussion of genetic heterogeneity of CDG type II, see CDG2A (212066).


Clinical Features

Boycott et al. (2015) reported 6 patients of Hutterite descent, including 2 patients from a large kindred from the Dariusleut group and 4 patients from 3 consanguineous families from the Schmiedeleut group, with a severe multisystem developmental disorder. The patients ranged in age from 6 to 23 years. They all had profound psychomotor retardation with delayed head control, severe hypotonia, inability to walk, variable ability to sit independently, and profound intellectual disability. Other features included strabismus, short stature, and recurrent infections; 2 patients had osteopenia, and 2 had seizures. Two sibs from a consanguineous Egyptian family had a similar phenotype, with severely delayed psychomotor development, hypotonia and hyperreflexia. Brain imaging in all patients showed cerebellar atrophy; 1 patient also had cortical atrophy. Laboratory studies showed decreased levels of manganese (Mn) and zinc (Zn) in blood, whereas urine levels tended to be high, indicating renal wasting. In addition, Park et al. (2015) found that 3 of the patients reported by Boycott et al. (2015) had abnormal transferrin glycosylation patterns, with decreased tetrasialo-transferrin and increased trisialo-, monosialo- and disialo-transferrin in a type II pattern.

Park et al. (2015) reported 2 unrelated females with CDG2N. The first patient, born of unrelated German parents, was noted to have short stature, short limbs, and cutaneous syndactyly of the feet at birth. She presented at age 4 months with disproportionate dwarfism, craniosynostosis, absence of visual fixation, strabismus, and hearing impairment. She had a flat face and low-set ears, and brain imaging showed cerebral atrophy and enlarged ventricles with a normal cerebellum. Severe refractory seizures, associated with hypsarrhythmia on EEG, occurred up to 5 times a day. A few months later, she had episodic apnea/hypopnea and liver disease, both of which resolved. Serum and urinary manganese concentrations were undetectable, and serum transferrin analysis showed a pattern consistent with a type II congenital disorder of glycosylation, with increased amounts of asialo-, monosialo-, disialo-, and trisialo-transferrin compared to controls. The patient was treated with dietary galactose, which resulted in a dramatic improvement in the transferrin glycosylation defect, although the clinical benefits were unclear. The second patient was a 19-year-old who had short stature and severely delayed global development apparent in the first year of life. She was hypotonic, confined to a wheelchair without the ability to sit or walk without support, and had very poor speech. She had seizures as a child that remitted. Other features included hyperopia, astigmatism, strabismus, nystagmus, mild elbow and knee contractures, and cerebellar atrophy. Laboratory studies showed undetectable manganese and a type II CDG pattern of serum transferrin.


Inheritance

The transmission pattern of CDG2N in the families reported by Boycott et al. (2015) and Park et al. (2015) was consistent with autosomal recessive inheritance.


Molecular Genetics

In 6 patients of Hutterite descent and in 2 sibs, born of consanguineous Egyptian parents, with CDG2N, Boycott et al. (2015) identified the same homozygous missense mutation in the SLC39A8 gene (G38R; 608732.0001). The mutations, which were found by a combination of homozygosity mapping and whole-exome sequencing, segregated with the disorder in the families. Haplotype analysis did not suggest a founder effect between the Hutterite and Egyptian patients. Patient cells showed normal localization of the mutant protein, but blood levels of Zn and Mn were low and urine levels of these cations were high, suggesting renal wasting and consistent with the mutation causing a loss of transporter function. Functional studies of the variant were not performed.

In 2 unrelated patients with CDG2N, Park et al. (2015) identified compound heterozygous mutations in the SLC39A8 gene (608732.0001-608732.0004). The mutations in the first patient were found by whole-exome sequencing; mutations in the second patient were found by direct sequencing of the SLC39A8 gene in patients with unknown glycosylation defects. Functional studies of the variants were not performed, but the patients had no detectable serum or urinary manganese, consistent with a loss of transporter function. The findings linked a trace element deficiency to an inherited glycosylation disorder.


Animal Model

Galvez-Peralta et al. (2012) found that mice homozygous for a hypomorphic Slc39a8 allele had stunted growth, severe anemia, dysregulation of hematopoiesis, and failure of multiple organs, such as spleen, liver, kidney, and lung, to develop normally in utero, all of which ultimately resulted in neonatal lethality. Other features included malformed cranium, hypoplastic hind limbs, and underdeveloped eyes. The mutant mice had decreased zinc, iron, and manganese levels in multiple tissues. The findings indicated that Slc39a8 is indispensable for proper embryonic development, and highlighted the importance of zinc homeostasis during this period.


REFERENCES

  1. Boycott, K. M., Beaulieu, C. L., Kernohan, K. D., Gebril, O. H., Mhanni, A., Chudley, A. E., Redl, D., Qin, W., Hampson, S., Kury, S., Tetreault, M., Puffenberger, E. G., and 15 others. Autosomal-recessive intellectual disability with cerebellar atrophy syndrome caused by mutation of the manganese and zinc transporter gene SLC39A8. Am. J. Hum. Genet. 97: 886-893, 2015. [PubMed: 26637978] [Full Text: https://doi.org/10.1016/j.ajhg.2015.11.002]

  2. Galvez-Peralta, M., He, L., Jorge-Nebert, L. F., Wang, B., Miller, M. L., Eppert, B. L., Afton, S., Nebert, D. W. ZIP8 zinc transporter: indispensable role for both multiple-organ organogenesis and hematopoiesis in utero. PLoS One 7: e36055, 2012. Note: Electronic Article. [PubMed: 22563477] [Full Text: https://doi.org/10.1371/journal.pone.0036055]

  3. Park, J. H., Hogrebe, M., Gruneberg, M., DuChesne, I., von der Heiden, A. L., Reunert, J., Schlingmann, K. P., Boycott, K. M., Beaulieu, C. L., Mhanni, A. A., Innes, A. M., Hortnagel, K., and 12 others. SLC39A8 deficiency: a disorder of manganese transport and glycosylation. Am. J. Hum. Genet. 97: 894-903, 2015. [PubMed: 26637979] [Full Text: https://doi.org/10.1016/j.ajhg.2015.11.003]


Creation Date:
Cassandra L. Kniffin : 12/26/2015

Edit History:
carol : 12/29/2015
carol : 12/29/2015
carol : 12/29/2015
ckniffin : 12/28/2015