Entry - *614825 - RALBP1-ASSOCIATED EPS DOMAIN-CONTAINING PROTEIN 1; REPS1 - OMIM
 
* 614825

RALBP1-ASSOCIATED EPS DOMAIN-CONTAINING PROTEIN 1; REPS1


HGNC Approved Gene Symbol: REPS1

Cytogenetic location: 6q24.1   Genomic coordinates (GRCh38) : 6:138,903,493-138,988,253 (from NCBI)


Gene-Phenotype Relationships
Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
6q24.1 ?Neurodegeneration with brain iron accumulation 7 617916 AR 3

TEXT

Description

The REPS1 gene encodes a protein involved in endocytosis and vesicular transport (summary by Drecourt et al., 2018).


Cloning and Expression

By large-scale sequencing of clones obtained from a human fetal brain cDNA library, followed by database analysis, Xu et al. (2001) identified the human ortholog of mouse Reps1. The deduced 744-amino acid REPS1 protein has a calculated molecular mass of 85 kD. It has a central EPS15 (600051) homology (EH) domain containing 2 EF hand motifs, followed by 2 proline-rich motifs. Mouse and human REPS1 share 83% amino acid identity. Northern blot analysis detected variable expression of an approximately 2.8-kb REPS1 transcript in all 16 human tissues examined, with highest expression in heart and testis.

Cullis et al. (2002) showed that fluorescence-tagged mouse Reps1 colocalized with rat Rab11fip2 (608599) at recycling endosomes in the perinuclear region of transfected NIH3T3 cells.


Gene Function

By yeast 2-hybrid and mutation analyses, Cullis et al. (2002) showed that the isolated EH domain of mouse Reps1 interacted with the NPF motifs of rat Rab11fip2. These 2 proteins appeared to function together in inhibiting the recycling of Egf receptors (EGFR; 131550), but not transferrin receptors (TFRC; 190010). Both Reps1 and Rab11fip2 also coprecipitated with the alpha-adaptin (AP2A1; 601026) subunit of the major clathrin adaptor complex AP2.


Gene Structure

Xu et al. (2001) determined that the REPS1 gene contains 20 exons and spans over 44 kb.


Mapping

By genomic sequence analysis, Xu et al. (2001) mapped the REPS1 gene to chromosome 6q23.1-q24.1.


Molecular Genetics

In 2 sisters, born of unrelated French parents, with neurodegeneration with brain iron accumulation-7 (NBIA7; 617916), Drecourt et al. (2018) identified compound heterozygous missense mutations in the REPS1 gene (V78L, 614825.0001 and A113E, 614825.0002). Both mutations occurred in the EH1 domain, a conserved region that interacts with RALBP1 (605801) to form the endosome recycling compartment. The variants, which were found by exome sequencing and confirmed by Sanger sequencing, segregated with the disorder in the family. Patient fibroblasts showed a significant increase (10- to 30-fold change) in cellular iron content when incubated with iron compared to controls, and wildtype RESP1 was able to return the iron content to control levels. In response to high iron, patient cells showed a normal and appropriate decrease in transferrin receptor (TFRC; 190010) mRNA levels, but the amount of TFRC did not decrease in patient cells, suggesting impaired posttranslational lysosomal-based degradation of TFRC. Patient cells showed impaired transferrin (190000) and TFRC trafficking and recycling compared to controls, with clustering at the surface and in the perinuclear region, as well as abnormally enlarged lysosomes. Patient cells also showed decreased palmitoylation of TFRC, which is necessary for regulating TFRC endocytosis. Addition of the antimalarial agent artesunate rescued abnormal TFRC palmitoylation and decreased iron content in cultured patient fibroblasts. Similar findings were observed in studies of cells from NBIA patients due to mutations in other NBIA-associated genes. Drecourt et al. (2018) concluded that certain forms of NBIA result from defective endosomal recycling and should be regarded as a disorder of cellular trafficking.


ALLELIC VARIANTS ( 2 Selected Examples):

.0001 NEURODEGENERATION WITH BRAIN IRON ACCUMULATION 7 (1 family)

REPS1, VAL78LEU
  
RCV000592202

In 2 sisters, born of unrelated French parents, with neurodegeneration with brain iron accumulation-7 (NBIA7; 617916), Drecourt et al. (2018) identified compound heterozygous missense mutations in the REPS1 gene: a c.232G-C transversion (c.232G-C, NM_001286611.1), resulting in a val78-to-leu (V78L) substitution, and a c.338C-A transversion, resulting in an ala113-to-glu (A113E; 614825.0002) substitution. Both mutations occurred in the EH1 domain, a conserved region that interacts with RALBP1 (605801) to form the endosome recycling compartment. The variants, which were found by exome sequencing and confirmed by Sanger sequencing, segregated with the disorder in the family. The V78L variant was not found in the dbSNP, Exome Sequencing Project (ESP), or ExAC databases, whereas A113E was found at a low frequency in all 3 databases (0.011% in ExAC and 0.0001 in ESP). Neither variant was found in 200 control chromosomes. Immunoblot analysis detected low amounts of REPS1 in patient fibroblasts.


.0002 NEURODEGENERATION WITH BRAIN IRON ACCUMULATION 7 (1 family)

RESP1, ALA113GLU (rs201191394)
  
RCV000595242...

For discussion of the c.338C-A transversion (c.338C-A, NM_001286611.1) in the RESP1 gene, resulting in an ala113-to-glu (A113E) substitution that was found in compound heterozygous state in 2 sisters with neurodegeneration with brain iron accumulation-7 (NBIA7; 617916) by Drecourt et al. (2018), see 614825.0001.


REFERENCES

  1. Cullis, D. N., Philip, B., Baleja, J. D., Feig, L. A. Rab11-FIP2, an adaptor protein connecting cellular components involved in internalization and recycling of epidermal growth factor receptors. J. Biol. Chem. 277: 49158-49166, 2002. [PubMed: 12364336, related citations] [Full Text]

  2. Drecourt, A., Babdor, J., Dussiot, M., Petit, F., Goudin, N., Garfa-Traore, M., Habarou, F., Bole-Feysot, C., Nitschke, P., Ottolenghi, C., Metodiev, M. D., Serre, V., Desguerre, I., Boddaert, N., Hermine, O., Munnich, A., Rotig, A. Impaired transferrin receptor palmitoylation and recycling in neurodegeneration with brain iron accumulation. Am. J. Hum. Genet. 102: 266-277, 2018. [PubMed: 29395073, related citations] [Full Text]

  3. Xu, J., Zhou, Z., Zeng, L., Huang, Y., Zhao, W., Cheng, C., Xu, M., Xie, Y., Mao, Y. Cloning, expression and characterization of a novel human REPS1 gene. Biochim. Biophys. Acta 1522: 118-121, 2001. [PubMed: 11750063, related citations] [Full Text]


Contributors:
Cassandra L. Kniffin - updated : 03/23/2018
Creation Date:
Patricia A. Hartz : 9/17/2012
alopez : 03/27/2018
ckniffin : 03/23/2018
mgross : 09/17/2012

* 614825

RALBP1-ASSOCIATED EPS DOMAIN-CONTAINING PROTEIN 1; REPS1


HGNC Approved Gene Symbol: REPS1

Cytogenetic location: 6q24.1   Genomic coordinates (GRCh38) : 6:138,903,493-138,988,253 (from NCBI)


Gene-Phenotype Relationships

Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
6q24.1 ?Neurodegeneration with brain iron accumulation 7 617916 Autosomal recessive 3

TEXT

Description

The REPS1 gene encodes a protein involved in endocytosis and vesicular transport (summary by Drecourt et al., 2018).


Cloning and Expression

By large-scale sequencing of clones obtained from a human fetal brain cDNA library, followed by database analysis, Xu et al. (2001) identified the human ortholog of mouse Reps1. The deduced 744-amino acid REPS1 protein has a calculated molecular mass of 85 kD. It has a central EPS15 (600051) homology (EH) domain containing 2 EF hand motifs, followed by 2 proline-rich motifs. Mouse and human REPS1 share 83% amino acid identity. Northern blot analysis detected variable expression of an approximately 2.8-kb REPS1 transcript in all 16 human tissues examined, with highest expression in heart and testis.

Cullis et al. (2002) showed that fluorescence-tagged mouse Reps1 colocalized with rat Rab11fip2 (608599) at recycling endosomes in the perinuclear region of transfected NIH3T3 cells.


Gene Function

By yeast 2-hybrid and mutation analyses, Cullis et al. (2002) showed that the isolated EH domain of mouse Reps1 interacted with the NPF motifs of rat Rab11fip2. These 2 proteins appeared to function together in inhibiting the recycling of Egf receptors (EGFR; 131550), but not transferrin receptors (TFRC; 190010). Both Reps1 and Rab11fip2 also coprecipitated with the alpha-adaptin (AP2A1; 601026) subunit of the major clathrin adaptor complex AP2.


Gene Structure

Xu et al. (2001) determined that the REPS1 gene contains 20 exons and spans over 44 kb.


Mapping

By genomic sequence analysis, Xu et al. (2001) mapped the REPS1 gene to chromosome 6q23.1-q24.1.


Molecular Genetics

In 2 sisters, born of unrelated French parents, with neurodegeneration with brain iron accumulation-7 (NBIA7; 617916), Drecourt et al. (2018) identified compound heterozygous missense mutations in the REPS1 gene (V78L, 614825.0001 and A113E, 614825.0002). Both mutations occurred in the EH1 domain, a conserved region that interacts with RALBP1 (605801) to form the endosome recycling compartment. The variants, which were found by exome sequencing and confirmed by Sanger sequencing, segregated with the disorder in the family. Patient fibroblasts showed a significant increase (10- to 30-fold change) in cellular iron content when incubated with iron compared to controls, and wildtype RESP1 was able to return the iron content to control levels. In response to high iron, patient cells showed a normal and appropriate decrease in transferrin receptor (TFRC; 190010) mRNA levels, but the amount of TFRC did not decrease in patient cells, suggesting impaired posttranslational lysosomal-based degradation of TFRC. Patient cells showed impaired transferrin (190000) and TFRC trafficking and recycling compared to controls, with clustering at the surface and in the perinuclear region, as well as abnormally enlarged lysosomes. Patient cells also showed decreased palmitoylation of TFRC, which is necessary for regulating TFRC endocytosis. Addition of the antimalarial agent artesunate rescued abnormal TFRC palmitoylation and decreased iron content in cultured patient fibroblasts. Similar findings were observed in studies of cells from NBIA patients due to mutations in other NBIA-associated genes. Drecourt et al. (2018) concluded that certain forms of NBIA result from defective endosomal recycling and should be regarded as a disorder of cellular trafficking.


ALLELIC VARIANTS 2 Selected Examples):

.0001   NEURODEGENERATION WITH BRAIN IRON ACCUMULATION 7 (1 family)

REPS1, VAL78LEU
SNP: rs1554292444, ClinVar: RCV000592202

In 2 sisters, born of unrelated French parents, with neurodegeneration with brain iron accumulation-7 (NBIA7; 617916), Drecourt et al. (2018) identified compound heterozygous missense mutations in the REPS1 gene: a c.232G-C transversion (c.232G-C, NM_001286611.1), resulting in a val78-to-leu (V78L) substitution, and a c.338C-A transversion, resulting in an ala113-to-glu (A113E; 614825.0002) substitution. Both mutations occurred in the EH1 domain, a conserved region that interacts with RALBP1 (605801) to form the endosome recycling compartment. The variants, which were found by exome sequencing and confirmed by Sanger sequencing, segregated with the disorder in the family. The V78L variant was not found in the dbSNP, Exome Sequencing Project (ESP), or ExAC databases, whereas A113E was found at a low frequency in all 3 databases (0.011% in ExAC and 0.0001 in ESP). Neither variant was found in 200 control chromosomes. Immunoblot analysis detected low amounts of REPS1 in patient fibroblasts.


.0002   NEURODEGENERATION WITH BRAIN IRON ACCUMULATION 7 (1 family)

RESP1, ALA113GLU ({dbSNP rs201191394})
SNP: rs201191394, gnomAD: rs201191394, ClinVar: RCV000595242, RCV000709993, RCV005091580

For discussion of the c.338C-A transversion (c.338C-A, NM_001286611.1) in the RESP1 gene, resulting in an ala113-to-glu (A113E) substitution that was found in compound heterozygous state in 2 sisters with neurodegeneration with brain iron accumulation-7 (NBIA7; 617916) by Drecourt et al. (2018), see 614825.0001.


REFERENCES

  1. Cullis, D. N., Philip, B., Baleja, J. D., Feig, L. A. Rab11-FIP2, an adaptor protein connecting cellular components involved in internalization and recycling of epidermal growth factor receptors. J. Biol. Chem. 277: 49158-49166, 2002. [PubMed: 12364336] [Full Text: https://doi.org/10.1074/jbc.M206316200]

  2. Drecourt, A., Babdor, J., Dussiot, M., Petit, F., Goudin, N., Garfa-Traore, M., Habarou, F., Bole-Feysot, C., Nitschke, P., Ottolenghi, C., Metodiev, M. D., Serre, V., Desguerre, I., Boddaert, N., Hermine, O., Munnich, A., Rotig, A. Impaired transferrin receptor palmitoylation and recycling in neurodegeneration with brain iron accumulation. Am. J. Hum. Genet. 102: 266-277, 2018. [PubMed: 29395073] [Full Text: https://doi.org/10.1016/j.ajhg.2018.01.003]

  3. Xu, J., Zhou, Z., Zeng, L., Huang, Y., Zhao, W., Cheng, C., Xu, M., Xie, Y., Mao, Y. Cloning, expression and characterization of a novel human REPS1 gene. Biochim. Biophys. Acta 1522: 118-121, 2001. [PubMed: 11750063] [Full Text: https://doi.org/10.1016/s0167-4781(01)00310-4]


Contributors:
Cassandra L. Kniffin - updated : 03/23/2018

Creation Date:
Patricia A. Hartz : 9/17/2012

Edit History:
alopez : 03/27/2018
ckniffin : 03/23/2018
mgross : 09/17/2012