Entry - #300400 - SEVERE COMBINED IMMUNODEFICIENCY, X-LINKED; SCIDX1 - OMIM
# 300400

SEVERE COMBINED IMMUNODEFICIENCY, X-LINKED; SCIDX1


Alternative titles; symbols

SEVERE COMBINED IMMUNODEFICIENCY, X-LINKED, T CELL-NEGATIVE, B CELL-POSITIVE, NK CELL-NEGATIVE
SCIDX; XSCID
SCID, X-LINKED
IMMUNODEFICIENCY 4; IMD4


Phenotype-Gene Relationships

Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
Gene/Locus Gene/Locus
MIM number
Xq13.1 Severe combined immunodeficiency, X-linked 300400 XLR 3 IL2RG 308380
Clinical Synopsis
 
Phenotypic Series
 

INHERITANCE
- X-linked recessive
GROWTH
Other
- Failure to thrive
HEAD & NECK
Mouth
- Oral thrush
RESPIRATORY
Nasopharynx
- Absent tonsils
Lung
- Pneumonia
ABDOMEN
Liver
- Hepatomegaly
Gastrointestinal
- Chronic diarrhea
SKIN, NAILS, & HAIR
Skin
- Candidal diaper rash
- Erythematous skin rashes
NEUROLOGIC
Central Nervous System
- Recurrent bacterial meningitis
IMMUNOLOGY
- Frequent bacterial, fungal and viral infections
- Specific antibody production very poor
- Natural killer cells, reduced numbers and cytotoxicity
- Absent T lymphocytes
- Thymic hypoplasia
- Lymphoid depletion
- Lymph nodes are small and poorly developed
LABORATORY ABNORMALITIES
- Low absolute lymphocyte count
- Agammaglobulinemia
MISCELLANEOUS
- Death within first year of life
MOLECULAR BASIS
- Caused by mutation in the interleukin receptor gamma chain gene (IL2RG, 308380.0001)
Immunodeficiency (select examples) - PS300755 - 143 Entries
Location Phenotype Inheritance Phenotype
mapping key
Phenotype
MIM number
Gene/Locus Gene/Locus
MIM number
1p36.33 Immunodeficiency 38 AR 3 616126 ISG15 147571
1p36.33 ?Immunodeficiency 16 AR 3 615593 TNFRSF4 600315
1p36.23 Immunodeficiency 109 with lymphoproliferation AR 3 620282 TNFRSF9 602250
1p36.22 Immunodeficiency 14B, autosomal recessive AR 3 619281 PIK3CD 602839
1p36.22 Immunodeficiency 14A, autosomal dominant AD 3 615513 PIK3CD 602839
1p35.2 Immunodeficiency 22 AR 3 615758 LCK 153390
1p34.2 Immunodeficiency 24 AR 3 615897 CTPS1 123860
1p22.3 ?Immunodeficiency 37 AR 3 616098 BCL10 603517
1q21.3 Immunodeficiency 42 AR 3 616622 RORC 602943
1q23.3 Immunodeficiency 20 AR 3 615707 FCGR3A 146740
1q24.2 ?Immunodeficiency 25 AR 3 610163 CD247 186780
1q25.3 Immunodeficiency 113 with autoimmunity and autoinflammation AR 3 620565 ARPC5 604227
1q25.3 Immunodeficiency 70 AD 3 618969 IVNS1ABP 609209
1q31.3-q32.1 Immunodeficiency 105, severe combined AR 3 619924 PTPRC 151460
2p16.1 Immunodeficiency 92 AR 3 619652 REL 164910
2p11.2 Immunodeficiency 116 AR 3 608957 CD8A 186910
2q11.2 Immunodeficiency 48 AR 3 269840 ZAP70 176947
2q24.2 Immunodeficiency 95 AR 3 619773 IFIH1 606951
2q32.2 Immunodeficiency 31B, mycobacterial and viral infections, autosomal recessive AR 3 613796 STAT1 600555
2q32.2 Immunodeficiency 31C, chronic mucocutaneous candidiasis, autosomal dominant AD 3 614162 STAT1 600555
2q32.2 Immunodeficiency 31A, mycobacteriosis, autosomal dominant AD 3 614892 STAT1 600555
2q33.2 ?Immunodeficiency 123 with HPV-related verrucosis AR 3 620901 CD28 186760
2q35 Immunodeficiency 124, severe combined AR 3 611291 NHEJ1 611290
3p22.2 Immunodeficiency 68 AR 3 612260 MYD88 602170
3q21.3 Immunodeficiency 21 AD 3 614172 GATA2 137295
3q21.3 ?Immunodeficiency 128 AR 3 620983 COPG1 615525
3q29 Immunodeficiency 46 AR 3 616740 TFRC 190010
4p14 Immunodeficiency 129 AR 3 618307 RHOH 602037
4q24 Immunodeficiency 75 AR 3 619126 TET2 612839
4q35.1 {Immunodeficiency 83, susceptibility to viral infections} AD, AR 3 613002 TLR3 603029
5p15.2 {Immunodeficiency 107, susceptibility to invasive staphylococcus aureus infection} AD 3 619986 OTULIN 615712
5p13.2 Immunodeficiency 104, severe combined AR 3 608971 IL7R 146661
5q11.2 ?Immunodeficiency 94 with autoinflammation and dysmorphic facies AD 3 619750 IL6ST 600694
5q13.1 Immunodeficiency 36 AD 3 616005 PIK3R1 171833
5q31.1 Immunodeficiency 93 and hypertrophic cardiomyopathy AR 3 619705 FNIP1 610594
5q31.1 Immunodeficiency 117, mycobacteriosis, autosomal recessive AR 3 620668 IRF1 147575
5q33.3 Immunodeficiency 29, mycobacteriosis AR 3 614890 IL12B 161561
5q35.1 Immunodeficiency 40 AR 3 616433 DOCK2 603122
5q35.1 Immunodeficiency 81 AR 3 619374 LCP2 601603
6p25.3 Immunodeficiency 131 AD, AR 3 621097 IRF4 601900
6p25.2 Immunodeficiency 57 with autoinflammation AR 3 618108 RIPK1 603453
6p21.33 ?Immunodeficiency 127 AR 3 620977 TNF 191160
6p21.31 Immunodeficiency 87 and autoimmunity AR 3 619573 DEF6 610094
6p21.1 Immunodeficiency 126 AR 3 620931 PTCRA 606817
6q14.1 Immunodeficiency 23 AR 3 615816 PGM3 172100
6q15 Immunodeficiency 60 and autoimmunity AD 3 618394 BACH2 605394
6q23.3 Immunodeficiency 27B, mycobacteriosis, AD AD 3 615978 IFNGR1 107470
6q23.3 Immunodeficiency 27A, mycobacteriosis, AR AR 3 209950 IFNGR1 107470
7p22.2 Immunodeficiency 11A AR 3 615206 CARD11 607210
7p22.2 Immunodeficiency 11B with atopic dermatitis AD 3 617638 CARD11 607210
7q22.1 Immunodeficiency 71 with inflammatory disease and congenital thrombocytopenia AR 3 617718 ARPC1B 604223
7q22.3 Immunodeficiency 97 with autoinflammation AR 3 619802 PIK3CG 601232
8p11.21 Immunodeficiency 15B AR 3 615592 IKBKB 603258
8p11.21 Immunodeficiency 15A AD 3 618204 IKBKB 603258
8q11.21 Immunodeficiency 26, with or without neurologic abnormalities AR 3 615966 PRKDC 600899
8q11.21 Immunodeficiency 54 AR 3 609981 MCM4 602638
8q21.13 Immunodeficiency 130 with HPV-related verrucosis AR 3 618309 IL7 146660
9q22.2 Immunodeficiency 82 with systemic inflammation AD 3 619381 SYK 600085
9q34.3 Immunodeficiency 103, susceptibility to fungal infection AR 3 212050 CARD9 607212
10p15.1 Immunodeficiency 41 with lymphoproliferation and autoimmunity AR 3 606367 IL2RA 147730
10p13 Immunodeficiency 80 with or without cardiomyopathy AR 3 619313 MCM10 609357
11p15.5 ?Immunodeficiency 39 AR 3 616345 IRF7 605047
11p15.4 Immunodeficiency 10 AR 3 612783 STIM1 605921
11q12.1 Immunodeficiency 77 AD 3 619223 MPEG1 610390
11q13.3 Immunodeficiency 90 with encephalopathy, functional hyposplenia, and hepatic dysfunction AR 3 613759 FADD 602457
11q13.4 Immunodeficiency 122 AR 3 620869 POLD3 611415
11q23.3 Immunodeficiency 18, SCID variant AR 3 615615 CD3E 186830
11q23.3 Immunodeficiency 18 AR 3 615615 CD3E 186830
11q23.3 Immunodeficiency 19, severe combined AR 3 615617 CD3D 186790
11q23.3 Immunodeficiency 17, CD3 gamma deficient AR 3 615607 CD3G 186740
11q23.3 ?Immunodeficiency 59 and hypoglycemia AR 3 233600 HYOU1 601746
12p13.31 Immunodeficiency 79 AR 3 619238 CD4 186940
12q12 Immunodeficiency 67 AR 3 607676 IRAK4 606883
12q13.13-q13.2 Immunodeficiency 72 with autoinflammation AR 3 618982 NCKAP1L 141180
12q13.3 Immunodeficiency 44 AR 3 616636 STAT2 600556
12q15 ?Immunodeficiency 69, mycobacteriosis AR 3 618963 IFNG 147570
12q24.13 Immunodeficiency 100 with pulmonary alveolar proteinosis and hypogammaglobulinemia AD 3 618042 OAS1 164350
12q24.31 Immunodeficiency 9 AR 3 612782 ORAI1 610277
13q33.1 Immunodeficiency 78 with autoimmunity and developmental delay AR 3 619220 TPP2 190470
14q11.2 Immunodeficiency 7, TCR-alpha/beta deficient AR 3 615387 TRAC 186880
14q11.2 ?Immunodeficiency 108 with autoinflammation AR 3 260570 CEBPE 600749
14q12 Immunodeficiency 115 with autoinflammation AR 3 620632 RNF31 612487
14q12 Immunodeficiency 65, susceptibility to viral infections AR 3 618648 IRF9 147574
14q32.2 Immunodeficiency 49, severe combined AD 3 617237 BCL11B 606558
14q32.32 Immunodeficiency 132A AD 3 614849 TRAF3 601896
14q32.32 Immunodeficiency 132B AD 3 621096 TRAF3 601896
15q14 Immunodeficiency 64 AR 3 618534 RASGRP1 603962
15q21.1 Immunodeficiency 43 AR 3 241600 B2M 109700
15q21.2 Immunodeficiency 86, mycobacteriosis AR 3 619549 SPPL2A 608238
16p12.1 Immunodeficiency 56 AR 3 615207 IL21R 605383
16p11.2 Immunodeficiency 52 AR 3 617514 LAT 602354
16p11.2 Immunodeficiency 8 AR 3 615401 CORO1A 605000
16q22.1 Immunodeficiency 58 AR 3 618131 CARMIL2 610859
16q22.1 Immunodeficiency 121 with autoinflammation AD 3 620807 PSMB10 176847
16q24.1 Immunodeficiency 32B, monocyte and dendritic cell deficiency, autosomal recessive AR 3 226990 IRF8 601565
16q24.1 Immunodeficiency 32A, mycobacteriosis, autosomal dominant AD 3 614893 IRF8 601565
17q11.2 ?Immunodeficiency 13 AD 3 615518 UNC119 604011
17q12-q21.1 ?Immunodeficiency 84 AD 3 619437 IKZF3 606221
17q21.31 Immunodeficiency 112 AR 3 620449 MAP3K14 604655
17q21.32 ?Immunodeficiency 88 AR 3 619630 TBX21 604895
18q21.32 Immunodeficiency 12 AR 3 615468 MALT1 604860
19p13.3 Hatipoglu immunodeficiency syndrome AR 3 620331 DPP9 608258
19p13.2 Immunodeficiency 35 AR 3 611521 TYK2 176941
19p13.11 Immunodeficiency 76 AR 3 619164 FCHO1 613437
19p13.11 Immunodeficiency 30 AR 3 614891 IL12RB1 601604
19q13.2 ?Immunodeficiency 62 AR 3 618459 ARHGEF1 601855
19q13.32 ?Immunodeficiency 53 AR 3 617585 RELB 604758
19q13.33 Immunodeficiency 96 AR 3 619774 LIG1 126391
19q13.33 ?Immunodeficiency 125 AR 3 620926 FLT3LG 600007
19q13.33 Immunodeficiency 120 AR 3 620836 POLD1 174761
20p11.23 ?Immunodeficiency 101 (varicella zoster virus-specific) AD 3 619872 POLR3F 617455
20p11.21 Immunodeficiency 55 AR 3 617827 GINS1 610608
20q11.23 ?Immunodeficiency 99 with hypogammaglobulinemia and autoimmune cytopenias AR 3 619846 CTNNBL1 611537
20q13.12 T-cell immunodeficiency, recurrent infections, autoimmunity, and cardiac malformations AR 3 614868 STK4 604965
20q13.13 Immunodeficiency 91 and hyperinflammation AR 3 619644 ZNFX1 618931
21q22.11 Immunodeficiency 45 AR 3 616669 IFNAR2 602376
21q22.11 Immunodeficiency 106, susceptibility to viral infections AR 3 619935 IFNAR1 107450
21q22.11 Immunodeficiency 28, mycobacteriosis AR 3 614889 IFNGR2 147569
21q22.3 ?Immunodeficiency 119 AR 3 620825 ICOSLG 605717
21q22.3 Immunodeficiency 114, folate-responsive AR 3 620603 SLC19A1 600424
22q11.1 Immunodeficiency 51 AR 3 613953 IL17RA 605461
22q12.3 ?Immunodeficiency 85 and autoimmunity AD 3 619510 TOM1 604700
22q12.3 Immunodeficiency 63 with lymphoproliferation and autoimmunity AR 3 618495 IL2RB 146710
22q13.1 ?Immunodeficiency 73C with defective neutrophil chemotaxis and hypogammaglobulinemia AR 3 618987 RAC2 602049
22q13.1 Immunodeficiency 73B with defective neutrophil chemotaxis and lymphopenia AD 3 618986 RAC2 602049
22q13.1 Immunodeficiency 73A with defective neutrophil chemotaxix and leukocytosis AD 3 608203 RAC2 602049
22q13.1 ?Immunodeficiency 89 and autoimmunity AR 3 619632 CARD10 607209
22q13.1-q13.2 ?Immunodeficiency 66 AR 3 618847 MKL1 606078
Xp22.2 Immunodeficiency 74, COVID19-related, X-linked XLR 3 301051 TLR7 300365
Xp22.2 Immunodeficiency 98 with autoinflammation, X-linked SMo, XL 3 301078 TLR8 300366
Xp22.12 ?Immunodeficiency 61 XLR 3 300310 SH3KBP1 300374
Xp21.1-p11.4 Immunodeficiency 34, mycobacteriosis, X-linked XLR 3 300645 CYBB 300481
Xp11.23 Wiskott-Aldrich syndrome XLR 3 301000 WAS 300392
Xq12 Immunodeficiency 50 XLR 3 300988 MSN 309845
Xq13.1 Severe combined immunodeficiency, X-linked XLR 3 300400 IL2RG 308380
Xq13.1 Combined immunodeficiency, X-linked, moderate XLR 3 312863 IL2RG 308380
Xq22.1 Agammaglobulinemia, X-linked 1 XLR 3 300755 BTK 300300
Xq24 Immunodeficiency 118, mycobacteriosis XLR 3 301115 MCTS1 300587
Xq25 Lymphoproliferative syndrome, X-linked, 1 XLR 3 308240 SH2D1A 300490
Xq26.1 Immunodeficiency 102 XLR 3 301082 SASH3 300441
Xq26.3 Immunodeficiency, X-linked, with hyper-IgM XLR 3 308230 TNFSF5 300386
Xq28 Immunodeficiency 47 XLR 3 300972 ATP6AP1 300197
Xq28 Immunodeficiency 33 XLR 3 300636 IKBKG 300248
Severe combined immunodeficiency (select examples) - PS601457 - 19 Entries

TEXT

A number sign (#) is used with this entry because T-, B+, NK- X-linked severe combined immunodeficiency (SCID) is caused by mutation in the gene encoding the gamma subunit of the interleukin-2 receptor (IL2RG; 308380). See also X-linked combined immunodeficiency (312863), a less severe form of the disorder that is also caused by mutation in the IL2RG gene.

An autosomal recessive form of T-, B+, NK- SCID (600802) is caused by mutation in the JAK3 gene (600173) on chromosome 19p13. For a general phenotypic description and a discussion of genetic heterogeneity of autosomal recessive SCID, see 601457.


Clinical Features

Severe combined immunodeficiency differs from the Bruton type (300755) of agammaglobulinemia by the additional presence of lymphocytopenia ('alymphocytosis'), earlier age at death, vulnerability to viral and fungal as well as bacterial infections, lack of delayed hypersensitivity, atrophy of the thymus, and lack of benefit from gamma globulin administration. Severe combined immunodeficiency, originally termed 'Swiss type agammaglobulinemia' to distinguish it from Bruton agammaglobulinemia, was first described in Switzerland by Hitzig and Willi (1961). Those cases showed autosomal recessive inheritance (see 601457).

Rosen et al. (1966) reported 3 families with SCID inherited in an X-linked recessive pattern: all patients were male, and 1 kindred had 9 affected males in 5 sibships spanning 3 generations connected through females. Gitlin and Craig (1963) reported 15 boys with hypogammaglobulinemia and noted that they could be divided into 2 groups of almost equal size based on their clinical course. The first group had onset of infections early in life, often before 3 months of age, followed by lymphopenia and persistent pneumonitis, moniliasis, and frequent rashes. This disorder was uniformly fatal in infancy even in children treated with gammaglobulin. Autopsy showed an abnormally small thymus with thymic alymphoplasia. The second group of patients had onset of infections somewhat later, usually between 6 and 18 months of age. Infection was intermittent rather than persistent, and gamma globulin was clinically useful. These patients did not have lymphopenia, and in those who died, the thymus was not found to be small, although lymph nodes lacked germinal follicles and plasma cells. About half the patients in each group had a family history of severe infections in male relatives. The first group would be known now to have X-linked severe combined immunodeficiency and the second group X-linked agammaglobulinemia of Bruton.

Miller and Schieken (1967) suggested that one form of 'thymic dysplasia' is X-linked. Thymic dysplasia is seen in SCID (Nezelof, 1992). An impressive pedigree with 6 affected males in 3 generations was published by Dooren et al. (1968), who, following the recommendations of a workshop on immunologic deficiency diseases in man (Sanibel Island, Fort Myers, Fla., Feb. 1-5, 1967), called the condition 'thymic epithelial hypoplasia.' In the same workshop, Rosen et al. (1968) noted that X-linked SCID had less profound lymphocytopenia than autosomal recessive SCID.

Yount et al. (1978) studied a child with X-linked SCID. Adenosine deaminase (ADA; 608958) and nucleoside phosphorylase (PNP; 164050) levels were normal. The patient had virtual absence of lymphocytes capable of rosetting with sheep red blood cells, absence of reactive skin tests, and lack of in vitro responses to mitogens, antigens or allogeneic cells. He had profound humoral immunodeficiency despite a plethora of B lymphocytes. The authors suggested that B cells were unable to undergo terminal differentiation into plasma cells capable of synthesizing and secreting immunoglobulins. A brother of the patient they studied died at age 10 months of Pneumocystis carinii pneumonia complicated by disseminated influenza infection (Hong Kong strain). Autopsy showed a hypoplastic thymus without epithelial corpuscles and absence of germinal centers in lymph nodes and bowel lamina propria.

In 2 unrelated males with SCID and thymic alymphoplasia, Conley et al. (1984) found that T cells demonstrated a typical XX female karyotype and were probably of maternal origin, whereas the B cells had an XY male karyotype. The authors suggested that there was maternal lymphoid engraftment and that the SCID in these patients was the result of graft-versus-host disease (GVHD; see 614395). Since this would presumably affect only males, repetition in the family would simulate X-linked recessive inheritance.

Kellermayer et al. (2006) reported an infant boy with X-linked SCID confirmed by genetic analysis. Detailed cellular studies showed a subset of 46,XX CD4+ T cells in the patient's peripheral blood, indicating a chimeric lymphocyte population presumably derived from transplacental maternal T lymphocytes. The patient exhibited a mild to moderate recurrent eczematous rash consistent with spontaneous graft-versus-host disease from recognition of these maternal cells, and was scheduled for bone marrow transplant. Kellermayer et al. (2006) noted that although transplacentally acquired maternal T lymphocytes are present in 40% of SCID patients, untreated cases may still be fatal.

Speckmann et al. (2008) reported a boy with a relatively mild form of X-linked SCID diagnosed by molecular analysis at age 5 years (308380.0013). The main clinical symptom was recurrent bronchitis. Immunologic investigations showed decreased circulating T and NK cells, and normal numbers of B cells. Genetic analysis of peripheral blood cells showed a dual signal, with the wildtype IL2RG gene in T cells and a mutant IL2RG gene in B cells, NK cells, and granulocytes. His unaffected mother was a carrier of the mutation. The findings were consistent with reversion of the mutation within a common T-cell precursor in the patient. In vitro functional analysis showed normal T-cell function, despite low levels of T cells, and impaired B cell antibody response. A similar patient with reversion of mutation in a T-cell progenitor was reported by Stephan et al. (1996) (see 308380.0010). However, Speckmann et al. (2008) noted that the patient reported by Stephan et al. (1996) ultimately showed a deteriorating course and required bone marrow stem cell transplantation at almost 7 years of age. The findings indicated that close immunologic surveillance is still needed in patients with mutation reversion.


Other Features

X Inactivation

By examining a differential pattern of methylation (Vogelstein et al., 1987), Goodship et al. (1988) showed nonrandom X-chromosome inactivation in T cells of 2 obligate XSCID carriers. The method was used to distinguish autosomal recessive and X-linked forms of the disease and to demonstrate carrier status in the mother of a sporadic case.

Conley et al. (1988) analyzed patterns of X-chromosome inactivation in B cells from 9 obligate XSCID carriers. Using somatic cell hybrids to distinguish between active and nonactive X chromosomes, the authors found that all obligate carriers showed preferential use of the nonmutant X chromosome in B cells. The small number of B-cell hybrids that contained the mutant X were derived from an immature subset of B cells. The results indicated that the XSCID gene product was required for B-cell maturation.

Puck et al. (1986, 1987) showed that carriers for X-linked SCID could be detected based on analysis of X-inactivation patterns. In a control group of noncarrier women, Puck et al. (1992) found a wide range of X-inactivation ratios; 20 to 86% of T cells had the paternal X chromosome active, indicating random X-inactivation. Maximum likelihood analysis suggested that mature human T cells were derived from a pool of only about 10 randomly inactivated stem cells. X inactivation in XSCID carriers was markedly skewed, favoring the nonmutant chromosome. The authors developed a maximum-likelihood odds-ratio test which enabled prediction of carrier status in XSCID pedigrees.

Conley et al. (1990) studied X-chromosome inactivation patterns in T cells from 16 women who had sons with sporadic SCID. By analysis of human/hamster hybrids that selectively retained the active human X chromosome and use of an X-linked RFLP for which the woman in question was heterozygous, they showed exclusive use of a single nonmutant X as the active X in T-cell hybrids from 7 of the 16 women, identifying these as carriers of the disorder. Studies on additional family members confirmed the mutant nature of the inactive X and showed the source of the new mutation in 3 of the families. The most consistent finding in 21 patients with X-linked SCID was an elevated proportion of B cells.

By the study of X-chromosome inactivation patterns, Goodship et al. (1991) demonstrated that the mutation is expressed in B lymphocytes and in granulocytes as well as in T lymphocytes. They concluded that this disorder is not in a T-lymphocyte differentiation gene but rather in a metabolic pathway as in ADA deficiency (102700) and PNP deficiency (613179).

De Saint-Basile et al. (1992) reported 6 individuals in 2 sibships of a French family with severe infections. The propositus, a 5-year-old boy, had severe and progressive T- and B-cell functional immunodeficiency. The mother and 1 sister showed nonrandom X chromosome inactivation of T cells and, partially, of B cells but not of polymorphonuclear leukocytes, a pattern similar to that observed in X-linked SCID carriers. RFLP studies identified a haplotype segregating with the abnormal locus that may be localized in the proximal part of the long arm of the X chromosome. The authors suggested that the disorder may represent either a new X-linked immunodeficiency or an 'attenuated phenotype' of X-linked SCID.

Hendriks et al. (1992) raised the possibility of 2 distinct XSCID defects. They determined the pattern of X-chromosome inactivation in 14 females, including 6 obligate carriers, from 3 unrelated pedigrees with XSCID. All 6 obligate carriers showed nonrandom X-inactivation of the mutant chromosome in T cells. Four obligate carriers had nonrandom X-inactivation in B cells, and 4 did not, consistent with the observation that B cells with the XSCID mutation exhibit a relative maturation disadvantage rather than an absolute arrest in differentiation. In carriers from 1 pedigree, granulocytes had complete inactivation of the mutated X chromosome, whereas granulocytes from carriers from the other 2 pedigrees showed a random X-chromosome inactivation. The authors concluded that an XSCID phenotype with involvement of granulocytes represented an XSCID variant.

Wengler et al. (1993) demonstrated that all 4 lymphoid cell populations studied, NK cells, B cells, CD4+ T cells, and CD8+ T cells, from 3 heterozygous women exhibited exclusive use of a single X as the active X, whereas both X chromosomes were used as the active X in neutrophils and monocytes. The study was done by means of a PCR technique based on 2 observations: that active and inactive X chromosomes differ in methylation and that throughout the genome there are highly polymorphic sites consisting of sequences of 2-to-5 nucleotides that are repeated a variable number of times.


Clinical Management

Shortly after the discovery of the HLA system (Amos and Bach, 1968), Gatti et al. (1968) restored immune function in an infant with SCID by transplantation of bone marrow from his HLA-identical sister. Over the following decade, however, lethal GVHD was a major problem when bone marrow from HLA-mismatched donors was transplanted. In the late 1970s, studies in rats and mice demonstrated that allogeneic marrow or spleen cells that were depleted of T cells rescued the recipient from lethal irradiation without causing fatal GVHD, despite differences in MHC antigens between the donor and the host. Techniques developed in the early 1980s to deplete human marrow of T cells made it possible to restore immune function by marrow transplantation in patients with any form of SCID.

Borzy et al. (1984) reported a patient with SCID who had maternally derived peripheral blood lymphocytes identified by chromosomal heteromorphisms defined by the quinacrine banding technique. These markers were also used to monitor the successful engraftment of lymphocytes from a sister after bone marrow transplantation.

Flake et al. (1996) reported the successful treatment of a fetus with X-linked SCID by the in utero transplantation of paternal bone marrow that was enriched with hematopoietic cell progenitors. The mother had lost a previous son at 7 months of age to this disease. Studies of that child's DNA identified a splice site mutation in the IL2RG gene (308380).

Buckley et al. (1999) reported on the outcome of hematopoietic stem cell transplantation in 89 consecutive infants with SCID at Duke University Medical Center over the previous 16.5 years and the extent of immune reconstitution in the 72 surviving patients. Patients with X-linked SCID represented the largest category with 43 patients, of whom 34 (79%) survived. Other patients treated by Buckley et al. (1999) included 6 cases of JAK3 deficiency (600802), 2 cases of interleukin-7 receptor alpha deficiency (IL7R; 608971), and 13 cases of adenosine deaminase deficiency (102700). Twenty-one of the patients had autosomal recessive SCID of unknown cause. At the time of latest evaluation, Buckley et al. (1999) found that all but 4 of the 72 survivors had normal T-cell function, and all the T cells in their blood were of donor origin; however, B-cell function remained abnormal in many of the recipients of haploidentical marrow. Forty-five of the 72 children were receiving intravenous immune globulin. A striking finding of the study was that all but 1 of the patients who were younger than 3.5 months of age when they received a bone marrow graft had survived. The results emphasized the necessity of early diagnosis of the disorder, which should be considered a pediatric emergency. Whereas the absence of T cells prevented GVHD, mild GVHD occurred most often in patients in whom maternal T-cell engraftment, which occurred during pregnancy, was detected. This finding strongly suggested that most of the transient graft-versus-host reactions were actually graft-versus-graft reactions: T cells in the graft vs maternal T cells.

Rosen (2002) reported that the infant boy with X-linked SCID who received a successful bone marrow transplant from his HLA-identical sister in 1968 (Gatti et al., 1968) was in robust health 34 years later.

Ting et al. (1999) showed that DNA from hair roots was particularly useful for the diagnosis of X-linked SCID in children who had been subjected to bone marrow transplantation where no pretransplant blood had been stored. They performed mutation analysis in 13 unrelated boys who had had bone marrow transplantation. Five boys had an affected male relative. Mutations were found in 11 cases, 6 of which were sporadic, and maternal mosaicism was found in 1 family. Three mothers of the 6 sporadic cases were identified as carriers.

Gene Therapy

After preclinical studies, Cavazzano-Calvo et al. (2000) initiated gene therapy trials for X-linked SCID based on the use of cDNA containing a defective gamma-c Moloney retrovirus-derived vector and ex vivo infection of CD34+ hematopoietic stem cells. After a 10-month follow-up, gamma-c transgene (IL2RG)-expressing T and NK cells were detected in 2 patients. T, B, and NK cell counts and function, including antigen-specific responses, were comparable to those of age-matched controls. that

Cavazzano-Calvo (2002) noted that gene therapy for SCID is indicated only for those patients for whom a satisfactory HLA match is not available. Given an HLA match, bone marrow transplantation is the treatment of choice. In the absence of T cells in an affected son, T cells from the mother may persist in the affected son, resulting in graph-versus-host manifestations such as dermatitis and enteritis. After gene therapy with the patient's cells carrying a gamma-c transgene, the maternal T cells (marked by the XX chromosomes) decline in a reciprocal arrangement with the rise in T cells with the XY sex chromosome constitution.

Hacein-Bey-Abina et al. (2002) reported successful treatment of 5 SCIDX patients with autologous CD34+ bone marrow cells that had been transduced in vivo with a defective retroviral vector carrying the IL2RG gene (308380). Integration and expression of the transgene and development of lymphocyte subgroups and their functions were sequentially analyzed over a period of up to 2.5 years after gene transfer. No adverse effects resulted from the procedure. Transduced T cells and natural killer cells appeared in the blood of 4 of the 5 patients within 4 months. The numbers and phenotypes of T cells, the repertoire of T-cell receptors, and the in vitro proliferative responses of T cells to several antigens after immunization were nearly normal up to 2 years after treatment. Thymopoiesis was documented by the presence of naive T cells and T-cell antigen-receptor episomes and the development of a normal-sized thymus gland. The frequency of transduced B cells was low, but serum immunoglobulin levels and antibody production after immunization were sufficient to avoid the need for intravenous immunoglobulin. Correction of the immunodeficiency eradicated established infections and allowed patients to have a normal life.

Hacein-Bey-Abina et al. (2003) stated the results of their earlier studies (Hacein-Bey-Abina et al., 2002) had been confirmed in 4 additional patients with typical X-linked SCID who were treated by the same ex vivo, retrovirally-mediated transfer of the IL2RG gene into CD34+ cells. Of the first 4 successfully treated patients, 3 continued to do well up to 3.6 years after gene therapy, whereas a serious adverse event occurred in the fourth patient. At routine checkup 30 months after gene therapy, the patient was found to have integration of the provirus into 1 site on 11p within the LMO2 locus (180385), which had previously been reported as the basis of acute lymphoblastic leukemia arising from T cells with alpha/beta receptors, usually with the chromosomal translocation t(11;14). Between 30 and 34 months after gene therapy, the patient's lymphocyte count rose to 300,000 per cubic millimeter, and hepatosplenomegaly developed. Response to chemotherapy regimen was satisfactory at the time of report.

Marshall (2002, 2003) reported the development of leukemia in 2 children who received gene therapy. Hacein-Bey-Abina et al. (2003) demonstrated that in the 2 patients who developed T-cell leukemia after retrovirus-mediated gene transfer into autologous CD34 cells, the retrovirus vector integration was in proximity to the LMO2 protooncogene promoter, leading to aberrant transcription and expression of LMO2. Hacein-Bey-Abina et al. (2003) speculated that SCIDX1-related features may have contributed to the unexpectedly high rate of leukemia-like syndrome in their gene therapy-treated patients. They speculated that, because of the differentiation block, there were more T-lymphocyte precursors among CD34 cells in SCIDX1 marrow than in marrow of normal controls, thus augmenting the number of cells at risk for vector integration and further proliferation once the gamma-c transgene is expressed.

By searching a database containing the sequences of more than 3,000 retroviral integration sites cloned from mouse retrovirally induced hematopoietic tumors, Dave et al. (2004) identified 2 leukemias with integrations at Lmo2 and 2 leukemias with integrations at Il2rg (308380). One of these leukemias contained integrations at both sites. These integrations were clonal, suggesting that they were acquired early during the establishment of the leukemia. The authors noted that the probability of finding a leukemia with clonal integrations at Lmo2 and Il2rg by random chance was exceedingly small, providing genetic evidence for cooperation between LMO2 and IL2RG. Leukemia 98-031 had a T-cell phenotype and upregulated Lmo2 expression, a finding consistent with that seen in SCIDX1 patient leukemias. Dave et al. (2004) suggested that the results provided a genetic explanation for the high frequency of leukemia in the gene therapy trials. In transplant patients, IL2RG is expressed from the ubiquitous Moloney viral long terminal repeat. Although this was expected to be safe, Dave et al. (2004) concluded that retrovirally expressed IL2RG might be oncogenic due to some subtle effect on growth or differentiation of infected cells. Dave et al. (2004) further concluded that their results boded well for future gene therapy trials, because in most trials the transplanted gene is unlikely to be oncogenic and occurrences of insertional mutagenesis will be low.

Although gene therapy had been shown to be highly effective treatment for infants with typical SCIDX1, the optimal treatment strategy in patients with previous failed allogeneic transplantation and those with attenuated disease who present late in life was unclear. Thrasher et al. (2005) reported the failure of gene therapy in 2 such patients, despite effective gene transfer to bone marrow CD34+ cells, suggesting that there are intrinsic host-dependent restrictions to efficacy. The authors considered it likely that initiation of normal thymopoiesis is time dependent and suggested that gene therapy in such patients should be considered as early as possible.

The low frequency of homologous recombination in human cells was an impediment to permanent modification of the human genome. Urnov et al. (2005) reported a general solution using 2 fundamental biologic processes: DNA recognition by C2H2-zinc finger proteins and homology-directed repair of DNA double-strand breaks. Zinc finger proteins engineered to recognize a unique chromosomal site can be fused to a nuclease domain, and a double-strand break induced by the resulting zinc finger nuclease can create specific sequence alterations by stimulating homologous recombination between the chromosome and an extrachromosomal DNA donor. Urnov et al. (2005) showed that zinc finger nucleases designed against an X-linked SCID mutation in the IL2RG gene yielded more than 18% gene-modified human cells without selection. Remarkably, about 7% of the cells acquired the desired genetic modification on both X chromosomes, with cell genotype accurately reflected at the mRNA and protein levels. Urnov et al. (2005) observed comparably high frequencies in human T cells, raising the possibility of strategies based on zinc finger nucleases for the treatment of disease.

Hacein-Bey-Abina et al. (2010) reported the results of a 9-year follow-up of 9 SCID patients treated with retrovirus-mediated transfer of the IL2RG gene to autologous CD34+ cells. Eight of 9 patients initially had successful correction of the immune dysfunction, but 4 patients developed T-cell acute lymphoblastic leukemia, resulting in death in 1. Transduced T cells were detected for up to 10.7 years after gene therapy. Seven patients, including 3 with leukemia, had sustained immune response; 3 required immunoglobulin replacement therapy. Transduced B cells were not detected in long-term follow-up.


Mapping

De Saint Basile et al. (1987) mapped the X-linked SCID locus to Xq11-q13 by linkage analysis with RFLPs. No recombination was observed with marker DXS159. According to Mensink and Schuurman (1987), J. L. Mandel found close linkage with the DXS159 marker at Xq12-q13 in 6 pedigrees. They also suggested that there may be more than one X-linked SCID locus because there was immunologic heterogeneity.

Puck et al. (1988) found linkage with loci in Xq12-q21.3, but concluded that the exact localization remained uncertain and that heterogeneity might exist. Puck et al. (1989) performed linkage analysis in 6 kindreds using a random pattern of T-cell X-inactivation to rule out the carrier state in at-risk women. Their findings, combined with analysis of Xq interstitial deletions, allowed assignment of the locus to Xq13.1-q21.1 and defined flanking markers for prenatal diagnosis and carrier testing. Smead et al. (1989) found no recombination among SCID, PGK1 (311800), and DXS72. DXS72 is known to be distal to SCID because males with normal immunity have been described with Xq21 interstitial deletions involving DXS72. DXS159 and DXS3 appeared to be flanking markers for SCID. Goodship et al. (1989) demonstrated no recombination between IMD4 and DXS159, PGK1, or DXS72; the maximum lod score for linkage to PGK1 was 5.03.


Molecular Genetics

In 3 unrelated patients with X-linked SCID, Noguchi et al. (1993) identified 3 different mutations in the IL2RG gene (308380.0001-308380.0003).


Population Genetics

X-linked SCID is the most common form of SCID and has been estimated to account for 46% (Buckley, 2004) to 70% of all SCID cases (Stephan et al., 1993; Fischer et al., 1997).

In a study of 108 patients with SCID, Buckley et al. (1997) found that IL2RG deficiency and JAK3 deficiency accounted for approximately 42% and approximately 6% of cases, respectively.


Nomenclature

X-linked SCID was earlier referred to as 'Swiss-type agammaglobulinemia' or thymic epithelial hypoplasia (Nezelof, 1992).

Leonard (1993) suggested that the common gamma chain of IL2R be designated gamma-c, and that X-linked SCID be termed gamma-c deficiency XSCID. X-linked severe combined immunodeficiency has been known colloquially as 'Bubble Boy disease' because it was the abnormality in a patient who lived in an isolation unit in Houston for a prolonged period.

See review by Leonard et al. (1994).


Animal Model

By somatic cell hybrid analysis and methylation differences, Deschenes et al. (1994) demonstrated that female dogs carrying X-linked SCID have the same lymphocyte-limited skewed X-chromosome inactivation patterns as human carriers. In canine XSCID, Henthorn et al. (1994) demonstrated a 4-bp deletion in the first exon of the IL2RG gene, resulting in a nonfunctional protein.

In addition to XSCID caused by mutations in the common IL2RG gene, an autosomal form of SCID (608971) with T-cell deficiency occurs in patients with a mutation in the IL7R gene (146661). IL7 (146660) is vital for B-cell development in mice, but not in humans. Ozaki et al. (2002) developed a mouse model with a phenotype resembling human XSCID by knocking out the genes for both Il4 (147780) and Il21r (605383). Mice lacking only the Il21r gene had normal B- and T-cell phenotypes and functions, with the exception of lower IgG1 and IgG2b and higher serum IgE levels. After immunization with various antigens and with the parasite Toxoplasma gondii, the normal increase in IgG1 antibodies, as well as antigen-specific IgG2b and IgG3 antibodies, was significantly lower than in wildtype mice, and there was an uncharacteristic marked increase in antigen-specific IgE responses. In contrast, mice lacking both Il4 and Il21r exhibited lower levels of IgG and IgA, but not IgM, analogous to humans with XSCID. After immunization, these double-knockout mice did not upregulate IgE, indicating that this phenomenon is Il4-dependent, nor did they upregulate the IgG subclasses. The double-knockout mice, but not mice lacking only Il4 or Il21r, had disorganized germinal centers. Ozaki et al. (2002) proposed that defective signaling by IL4 and IL21 (605384) might explain the B-cell defect in XSCID.

To investigate the origin of T-cell lymphoma risk in XSCID patients treated with IL2RG gene therapy, Woods et al. (2006) expressed IL2RG inserted into a lentiviral vector in a murine model of XSCID, and followed the fates of mice for up to 1.5 years posttransplantation. Unexpectedly, 15 (33%) of these mice developed T-cell lymphomas that were associated with a gross thymic mass. Lymphomic tissues shared a common lymphomic stem cell, with similar vector-integration sites evident in the DNA of the thymus, bone marrow, and spleen of individual mice; however, no common integration targets were found between mice. Woods et al. (2006) concluded that IL2RG itself may be oncogenic to patients. They further cautioned that any preclinical experimental treatments involving transgenes should include long-term follow-up before they enter clinical trials.


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  60. Yount, W. J., Utsinger, P. D., Whisnant, J., Folds, J. D. Lymphocyte subpopulations in X-linked severe combined immunodeficiency (SCID): evidence against a stem cell defect; transformation response to calcium ionophore A23187. Am. J. Med. 65: 847-854, 1978. [PubMed: 360838, related citations] [Full Text]


Cassandra L. Kniffin - updated : 7/29/2010
Cassandra L. Kniffin - updated : 7/6/2006
Ada Hamosh - updated : 5/15/2006
Victor A. McKusick - updated : 8/11/2005
Ada Hamosh - updated : 6/15/2005
Cassandra L. Kniffin - reorganized : 10/28/2004
Cassandra L. Kniffin - updated : 10/20/2004
Ada Hamosh - updated : 2/2/2004
Ada Hamosh - updated : 10/28/2003
Victor A. McKusick - updated : 6/27/2003
Victor A. McKusick - updated : 1/24/2003
Paul J. Converse - updated : 12/3/2002
Victor A. McKusick - updated : 9/9/2002
Victor A. McKusick - updated : 5/14/2002
Ada Hamosh - updated : 5/2/2000
Victor A. McKusick - updated : 9/29/1999
Victor A. McKusick - updated : 3/12/1999
Victor A. McKusick - updated : 11/10/1998
Creation Date:
Victor A. McKusick : 6/4/1986
mgross : 02/11/2014
mcolton : 1/23/2014
terry : 9/25/2012
carol : 3/26/2012
terry : 1/18/2012
mgross : 12/16/2011
terry : 9/9/2010
wwang : 8/6/2010
ckniffin : 7/29/2010
carol : 12/17/2009
wwang : 9/9/2009
terry : 3/27/2009
wwang : 3/18/2009
ckniffin : 3/9/2009
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ckniffin : 7/6/2006
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terry : 5/15/2006
wwang : 8/12/2005
wwang : 8/12/2005
terry : 8/11/2005
alopez : 6/15/2005
terry : 6/15/2005
carol : 10/28/2004
terry : 10/28/2004
ckniffin : 10/27/2004
ckniffin : 10/20/2004
alopez : 2/2/2004
tkritzer : 10/29/2003
terry : 10/28/2003
carol : 7/8/2003
terry : 6/27/2003
terry : 6/27/2003
cwells : 2/3/2003
terry : 1/24/2003
mgross : 12/3/2002
alopez : 9/9/2002
terry : 5/14/2002
alopez : 5/2/2000
alopez : 2/29/2000
mgross : 10/13/1999
terry : 9/29/1999
carol : 3/15/1999
terry : 3/12/1999
carol : 11/17/1998
terry : 11/10/1998
dkim : 7/21/1998
mark : 6/10/1997
mark : 1/6/1997
terry : 1/3/1997
carol : 1/11/1995
jason : 6/28/1994
davew : 6/8/1994
mimadm : 3/29/1994
carol : 4/13/1993
carol : 10/27/1992

# 300400

SEVERE COMBINED IMMUNODEFICIENCY, X-LINKED; SCIDX1


Alternative titles; symbols

SEVERE COMBINED IMMUNODEFICIENCY, X-LINKED, T CELL-NEGATIVE, B CELL-POSITIVE, NK CELL-NEGATIVE
SCIDX; XSCID
SCID, X-LINKED
IMMUNODEFICIENCY 4; IMD4


ORPHA: 276;   DO: 0060013;  


Phenotype-Gene Relationships

Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
Gene/Locus Gene/Locus
MIM number
Xq13.1 Severe combined immunodeficiency, X-linked 300400 X-linked recessive 3 IL2RG 308380

TEXT

A number sign (#) is used with this entry because T-, B+, NK- X-linked severe combined immunodeficiency (SCID) is caused by mutation in the gene encoding the gamma subunit of the interleukin-2 receptor (IL2RG; 308380). See also X-linked combined immunodeficiency (312863), a less severe form of the disorder that is also caused by mutation in the IL2RG gene.

An autosomal recessive form of T-, B+, NK- SCID (600802) is caused by mutation in the JAK3 gene (600173) on chromosome 19p13. For a general phenotypic description and a discussion of genetic heterogeneity of autosomal recessive SCID, see 601457.


Clinical Features

Severe combined immunodeficiency differs from the Bruton type (300755) of agammaglobulinemia by the additional presence of lymphocytopenia ('alymphocytosis'), earlier age at death, vulnerability to viral and fungal as well as bacterial infections, lack of delayed hypersensitivity, atrophy of the thymus, and lack of benefit from gamma globulin administration. Severe combined immunodeficiency, originally termed 'Swiss type agammaglobulinemia' to distinguish it from Bruton agammaglobulinemia, was first described in Switzerland by Hitzig and Willi (1961). Those cases showed autosomal recessive inheritance (see 601457).

Rosen et al. (1966) reported 3 families with SCID inherited in an X-linked recessive pattern: all patients were male, and 1 kindred had 9 affected males in 5 sibships spanning 3 generations connected through females. Gitlin and Craig (1963) reported 15 boys with hypogammaglobulinemia and noted that they could be divided into 2 groups of almost equal size based on their clinical course. The first group had onset of infections early in life, often before 3 months of age, followed by lymphopenia and persistent pneumonitis, moniliasis, and frequent rashes. This disorder was uniformly fatal in infancy even in children treated with gammaglobulin. Autopsy showed an abnormally small thymus with thymic alymphoplasia. The second group of patients had onset of infections somewhat later, usually between 6 and 18 months of age. Infection was intermittent rather than persistent, and gamma globulin was clinically useful. These patients did not have lymphopenia, and in those who died, the thymus was not found to be small, although lymph nodes lacked germinal follicles and plasma cells. About half the patients in each group had a family history of severe infections in male relatives. The first group would be known now to have X-linked severe combined immunodeficiency and the second group X-linked agammaglobulinemia of Bruton.

Miller and Schieken (1967) suggested that one form of 'thymic dysplasia' is X-linked. Thymic dysplasia is seen in SCID (Nezelof, 1992). An impressive pedigree with 6 affected males in 3 generations was published by Dooren et al. (1968), who, following the recommendations of a workshop on immunologic deficiency diseases in man (Sanibel Island, Fort Myers, Fla., Feb. 1-5, 1967), called the condition 'thymic epithelial hypoplasia.' In the same workshop, Rosen et al. (1968) noted that X-linked SCID had less profound lymphocytopenia than autosomal recessive SCID.

Yount et al. (1978) studied a child with X-linked SCID. Adenosine deaminase (ADA; 608958) and nucleoside phosphorylase (PNP; 164050) levels were normal. The patient had virtual absence of lymphocytes capable of rosetting with sheep red blood cells, absence of reactive skin tests, and lack of in vitro responses to mitogens, antigens or allogeneic cells. He had profound humoral immunodeficiency despite a plethora of B lymphocytes. The authors suggested that B cells were unable to undergo terminal differentiation into plasma cells capable of synthesizing and secreting immunoglobulins. A brother of the patient they studied died at age 10 months of Pneumocystis carinii pneumonia complicated by disseminated influenza infection (Hong Kong strain). Autopsy showed a hypoplastic thymus without epithelial corpuscles and absence of germinal centers in lymph nodes and bowel lamina propria.

In 2 unrelated males with SCID and thymic alymphoplasia, Conley et al. (1984) found that T cells demonstrated a typical XX female karyotype and were probably of maternal origin, whereas the B cells had an XY male karyotype. The authors suggested that there was maternal lymphoid engraftment and that the SCID in these patients was the result of graft-versus-host disease (GVHD; see 614395). Since this would presumably affect only males, repetition in the family would simulate X-linked recessive inheritance.

Kellermayer et al. (2006) reported an infant boy with X-linked SCID confirmed by genetic analysis. Detailed cellular studies showed a subset of 46,XX CD4+ T cells in the patient's peripheral blood, indicating a chimeric lymphocyte population presumably derived from transplacental maternal T lymphocytes. The patient exhibited a mild to moderate recurrent eczematous rash consistent with spontaneous graft-versus-host disease from recognition of these maternal cells, and was scheduled for bone marrow transplant. Kellermayer et al. (2006) noted that although transplacentally acquired maternal T lymphocytes are present in 40% of SCID patients, untreated cases may still be fatal.

Speckmann et al. (2008) reported a boy with a relatively mild form of X-linked SCID diagnosed by molecular analysis at age 5 years (308380.0013). The main clinical symptom was recurrent bronchitis. Immunologic investigations showed decreased circulating T and NK cells, and normal numbers of B cells. Genetic analysis of peripheral blood cells showed a dual signal, with the wildtype IL2RG gene in T cells and a mutant IL2RG gene in B cells, NK cells, and granulocytes. His unaffected mother was a carrier of the mutation. The findings were consistent with reversion of the mutation within a common T-cell precursor in the patient. In vitro functional analysis showed normal T-cell function, despite low levels of T cells, and impaired B cell antibody response. A similar patient with reversion of mutation in a T-cell progenitor was reported by Stephan et al. (1996) (see 308380.0010). However, Speckmann et al. (2008) noted that the patient reported by Stephan et al. (1996) ultimately showed a deteriorating course and required bone marrow stem cell transplantation at almost 7 years of age. The findings indicated that close immunologic surveillance is still needed in patients with mutation reversion.


Other Features

X Inactivation

By examining a differential pattern of methylation (Vogelstein et al., 1987), Goodship et al. (1988) showed nonrandom X-chromosome inactivation in T cells of 2 obligate XSCID carriers. The method was used to distinguish autosomal recessive and X-linked forms of the disease and to demonstrate carrier status in the mother of a sporadic case.

Conley et al. (1988) analyzed patterns of X-chromosome inactivation in B cells from 9 obligate XSCID carriers. Using somatic cell hybrids to distinguish between active and nonactive X chromosomes, the authors found that all obligate carriers showed preferential use of the nonmutant X chromosome in B cells. The small number of B-cell hybrids that contained the mutant X were derived from an immature subset of B cells. The results indicated that the XSCID gene product was required for B-cell maturation.

Puck et al. (1986, 1987) showed that carriers for X-linked SCID could be detected based on analysis of X-inactivation patterns. In a control group of noncarrier women, Puck et al. (1992) found a wide range of X-inactivation ratios; 20 to 86% of T cells had the paternal X chromosome active, indicating random X-inactivation. Maximum likelihood analysis suggested that mature human T cells were derived from a pool of only about 10 randomly inactivated stem cells. X inactivation in XSCID carriers was markedly skewed, favoring the nonmutant chromosome. The authors developed a maximum-likelihood odds-ratio test which enabled prediction of carrier status in XSCID pedigrees.

Conley et al. (1990) studied X-chromosome inactivation patterns in T cells from 16 women who had sons with sporadic SCID. By analysis of human/hamster hybrids that selectively retained the active human X chromosome and use of an X-linked RFLP for which the woman in question was heterozygous, they showed exclusive use of a single nonmutant X as the active X in T-cell hybrids from 7 of the 16 women, identifying these as carriers of the disorder. Studies on additional family members confirmed the mutant nature of the inactive X and showed the source of the new mutation in 3 of the families. The most consistent finding in 21 patients with X-linked SCID was an elevated proportion of B cells.

By the study of X-chromosome inactivation patterns, Goodship et al. (1991) demonstrated that the mutation is expressed in B lymphocytes and in granulocytes as well as in T lymphocytes. They concluded that this disorder is not in a T-lymphocyte differentiation gene but rather in a metabolic pathway as in ADA deficiency (102700) and PNP deficiency (613179).

De Saint-Basile et al. (1992) reported 6 individuals in 2 sibships of a French family with severe infections. The propositus, a 5-year-old boy, had severe and progressive T- and B-cell functional immunodeficiency. The mother and 1 sister showed nonrandom X chromosome inactivation of T cells and, partially, of B cells but not of polymorphonuclear leukocytes, a pattern similar to that observed in X-linked SCID carriers. RFLP studies identified a haplotype segregating with the abnormal locus that may be localized in the proximal part of the long arm of the X chromosome. The authors suggested that the disorder may represent either a new X-linked immunodeficiency or an 'attenuated phenotype' of X-linked SCID.

Hendriks et al. (1992) raised the possibility of 2 distinct XSCID defects. They determined the pattern of X-chromosome inactivation in 14 females, including 6 obligate carriers, from 3 unrelated pedigrees with XSCID. All 6 obligate carriers showed nonrandom X-inactivation of the mutant chromosome in T cells. Four obligate carriers had nonrandom X-inactivation in B cells, and 4 did not, consistent with the observation that B cells with the XSCID mutation exhibit a relative maturation disadvantage rather than an absolute arrest in differentiation. In carriers from 1 pedigree, granulocytes had complete inactivation of the mutated X chromosome, whereas granulocytes from carriers from the other 2 pedigrees showed a random X-chromosome inactivation. The authors concluded that an XSCID phenotype with involvement of granulocytes represented an XSCID variant.

Wengler et al. (1993) demonstrated that all 4 lymphoid cell populations studied, NK cells, B cells, CD4+ T cells, and CD8+ T cells, from 3 heterozygous women exhibited exclusive use of a single X as the active X, whereas both X chromosomes were used as the active X in neutrophils and monocytes. The study was done by means of a PCR technique based on 2 observations: that active and inactive X chromosomes differ in methylation and that throughout the genome there are highly polymorphic sites consisting of sequences of 2-to-5 nucleotides that are repeated a variable number of times.


Clinical Management

Shortly after the discovery of the HLA system (Amos and Bach, 1968), Gatti et al. (1968) restored immune function in an infant with SCID by transplantation of bone marrow from his HLA-identical sister. Over the following decade, however, lethal GVHD was a major problem when bone marrow from HLA-mismatched donors was transplanted. In the late 1970s, studies in rats and mice demonstrated that allogeneic marrow or spleen cells that were depleted of T cells rescued the recipient from lethal irradiation without causing fatal GVHD, despite differences in MHC antigens between the donor and the host. Techniques developed in the early 1980s to deplete human marrow of T cells made it possible to restore immune function by marrow transplantation in patients with any form of SCID.

Borzy et al. (1984) reported a patient with SCID who had maternally derived peripheral blood lymphocytes identified by chromosomal heteromorphisms defined by the quinacrine banding technique. These markers were also used to monitor the successful engraftment of lymphocytes from a sister after bone marrow transplantation.

Flake et al. (1996) reported the successful treatment of a fetus with X-linked SCID by the in utero transplantation of paternal bone marrow that was enriched with hematopoietic cell progenitors. The mother had lost a previous son at 7 months of age to this disease. Studies of that child's DNA identified a splice site mutation in the IL2RG gene (308380).

Buckley et al. (1999) reported on the outcome of hematopoietic stem cell transplantation in 89 consecutive infants with SCID at Duke University Medical Center over the previous 16.5 years and the extent of immune reconstitution in the 72 surviving patients. Patients with X-linked SCID represented the largest category with 43 patients, of whom 34 (79%) survived. Other patients treated by Buckley et al. (1999) included 6 cases of JAK3 deficiency (600802), 2 cases of interleukin-7 receptor alpha deficiency (IL7R; 608971), and 13 cases of adenosine deaminase deficiency (102700). Twenty-one of the patients had autosomal recessive SCID of unknown cause. At the time of latest evaluation, Buckley et al. (1999) found that all but 4 of the 72 survivors had normal T-cell function, and all the T cells in their blood were of donor origin; however, B-cell function remained abnormal in many of the recipients of haploidentical marrow. Forty-five of the 72 children were receiving intravenous immune globulin. A striking finding of the study was that all but 1 of the patients who were younger than 3.5 months of age when they received a bone marrow graft had survived. The results emphasized the necessity of early diagnosis of the disorder, which should be considered a pediatric emergency. Whereas the absence of T cells prevented GVHD, mild GVHD occurred most often in patients in whom maternal T-cell engraftment, which occurred during pregnancy, was detected. This finding strongly suggested that most of the transient graft-versus-host reactions were actually graft-versus-graft reactions: T cells in the graft vs maternal T cells.

Rosen (2002) reported that the infant boy with X-linked SCID who received a successful bone marrow transplant from his HLA-identical sister in 1968 (Gatti et al., 1968) was in robust health 34 years later.

Ting et al. (1999) showed that DNA from hair roots was particularly useful for the diagnosis of X-linked SCID in children who had been subjected to bone marrow transplantation where no pretransplant blood had been stored. They performed mutation analysis in 13 unrelated boys who had had bone marrow transplantation. Five boys had an affected male relative. Mutations were found in 11 cases, 6 of which were sporadic, and maternal mosaicism was found in 1 family. Three mothers of the 6 sporadic cases were identified as carriers.

Gene Therapy

After preclinical studies, Cavazzano-Calvo et al. (2000) initiated gene therapy trials for X-linked SCID based on the use of cDNA containing a defective gamma-c Moloney retrovirus-derived vector and ex vivo infection of CD34+ hematopoietic stem cells. After a 10-month follow-up, gamma-c transgene (IL2RG)-expressing T and NK cells were detected in 2 patients. T, B, and NK cell counts and function, including antigen-specific responses, were comparable to those of age-matched controls. that

Cavazzano-Calvo (2002) noted that gene therapy for SCID is indicated only for those patients for whom a satisfactory HLA match is not available. Given an HLA match, bone marrow transplantation is the treatment of choice. In the absence of T cells in an affected son, T cells from the mother may persist in the affected son, resulting in graph-versus-host manifestations such as dermatitis and enteritis. After gene therapy with the patient's cells carrying a gamma-c transgene, the maternal T cells (marked by the XX chromosomes) decline in a reciprocal arrangement with the rise in T cells with the XY sex chromosome constitution.

Hacein-Bey-Abina et al. (2002) reported successful treatment of 5 SCIDX patients with autologous CD34+ bone marrow cells that had been transduced in vivo with a defective retroviral vector carrying the IL2RG gene (308380). Integration and expression of the transgene and development of lymphocyte subgroups and their functions were sequentially analyzed over a period of up to 2.5 years after gene transfer. No adverse effects resulted from the procedure. Transduced T cells and natural killer cells appeared in the blood of 4 of the 5 patients within 4 months. The numbers and phenotypes of T cells, the repertoire of T-cell receptors, and the in vitro proliferative responses of T cells to several antigens after immunization were nearly normal up to 2 years after treatment. Thymopoiesis was documented by the presence of naive T cells and T-cell antigen-receptor episomes and the development of a normal-sized thymus gland. The frequency of transduced B cells was low, but serum immunoglobulin levels and antibody production after immunization were sufficient to avoid the need for intravenous immunoglobulin. Correction of the immunodeficiency eradicated established infections and allowed patients to have a normal life.

Hacein-Bey-Abina et al. (2003) stated the results of their earlier studies (Hacein-Bey-Abina et al., 2002) had been confirmed in 4 additional patients with typical X-linked SCID who were treated by the same ex vivo, retrovirally-mediated transfer of the IL2RG gene into CD34+ cells. Of the first 4 successfully treated patients, 3 continued to do well up to 3.6 years after gene therapy, whereas a serious adverse event occurred in the fourth patient. At routine checkup 30 months after gene therapy, the patient was found to have integration of the provirus into 1 site on 11p within the LMO2 locus (180385), which had previously been reported as the basis of acute lymphoblastic leukemia arising from T cells with alpha/beta receptors, usually with the chromosomal translocation t(11;14). Between 30 and 34 months after gene therapy, the patient's lymphocyte count rose to 300,000 per cubic millimeter, and hepatosplenomegaly developed. Response to chemotherapy regimen was satisfactory at the time of report.

Marshall (2002, 2003) reported the development of leukemia in 2 children who received gene therapy. Hacein-Bey-Abina et al. (2003) demonstrated that in the 2 patients who developed T-cell leukemia after retrovirus-mediated gene transfer into autologous CD34 cells, the retrovirus vector integration was in proximity to the LMO2 protooncogene promoter, leading to aberrant transcription and expression of LMO2. Hacein-Bey-Abina et al. (2003) speculated that SCIDX1-related features may have contributed to the unexpectedly high rate of leukemia-like syndrome in their gene therapy-treated patients. They speculated that, because of the differentiation block, there were more T-lymphocyte precursors among CD34 cells in SCIDX1 marrow than in marrow of normal controls, thus augmenting the number of cells at risk for vector integration and further proliferation once the gamma-c transgene is expressed.

By searching a database containing the sequences of more than 3,000 retroviral integration sites cloned from mouse retrovirally induced hematopoietic tumors, Dave et al. (2004) identified 2 leukemias with integrations at Lmo2 and 2 leukemias with integrations at Il2rg (308380). One of these leukemias contained integrations at both sites. These integrations were clonal, suggesting that they were acquired early during the establishment of the leukemia. The authors noted that the probability of finding a leukemia with clonal integrations at Lmo2 and Il2rg by random chance was exceedingly small, providing genetic evidence for cooperation between LMO2 and IL2RG. Leukemia 98-031 had a T-cell phenotype and upregulated Lmo2 expression, a finding consistent with that seen in SCIDX1 patient leukemias. Dave et al. (2004) suggested that the results provided a genetic explanation for the high frequency of leukemia in the gene therapy trials. In transplant patients, IL2RG is expressed from the ubiquitous Moloney viral long terminal repeat. Although this was expected to be safe, Dave et al. (2004) concluded that retrovirally expressed IL2RG might be oncogenic due to some subtle effect on growth or differentiation of infected cells. Dave et al. (2004) further concluded that their results boded well for future gene therapy trials, because in most trials the transplanted gene is unlikely to be oncogenic and occurrences of insertional mutagenesis will be low.

Although gene therapy had been shown to be highly effective treatment for infants with typical SCIDX1, the optimal treatment strategy in patients with previous failed allogeneic transplantation and those with attenuated disease who present late in life was unclear. Thrasher et al. (2005) reported the failure of gene therapy in 2 such patients, despite effective gene transfer to bone marrow CD34+ cells, suggesting that there are intrinsic host-dependent restrictions to efficacy. The authors considered it likely that initiation of normal thymopoiesis is time dependent and suggested that gene therapy in such patients should be considered as early as possible.

The low frequency of homologous recombination in human cells was an impediment to permanent modification of the human genome. Urnov et al. (2005) reported a general solution using 2 fundamental biologic processes: DNA recognition by C2H2-zinc finger proteins and homology-directed repair of DNA double-strand breaks. Zinc finger proteins engineered to recognize a unique chromosomal site can be fused to a nuclease domain, and a double-strand break induced by the resulting zinc finger nuclease can create specific sequence alterations by stimulating homologous recombination between the chromosome and an extrachromosomal DNA donor. Urnov et al. (2005) showed that zinc finger nucleases designed against an X-linked SCID mutation in the IL2RG gene yielded more than 18% gene-modified human cells without selection. Remarkably, about 7% of the cells acquired the desired genetic modification on both X chromosomes, with cell genotype accurately reflected at the mRNA and protein levels. Urnov et al. (2005) observed comparably high frequencies in human T cells, raising the possibility of strategies based on zinc finger nucleases for the treatment of disease.

Hacein-Bey-Abina et al. (2010) reported the results of a 9-year follow-up of 9 SCID patients treated with retrovirus-mediated transfer of the IL2RG gene to autologous CD34+ cells. Eight of 9 patients initially had successful correction of the immune dysfunction, but 4 patients developed T-cell acute lymphoblastic leukemia, resulting in death in 1. Transduced T cells were detected for up to 10.7 years after gene therapy. Seven patients, including 3 with leukemia, had sustained immune response; 3 required immunoglobulin replacement therapy. Transduced B cells were not detected in long-term follow-up.


Mapping

De Saint Basile et al. (1987) mapped the X-linked SCID locus to Xq11-q13 by linkage analysis with RFLPs. No recombination was observed with marker DXS159. According to Mensink and Schuurman (1987), J. L. Mandel found close linkage with the DXS159 marker at Xq12-q13 in 6 pedigrees. They also suggested that there may be more than one X-linked SCID locus because there was immunologic heterogeneity.

Puck et al. (1988) found linkage with loci in Xq12-q21.3, but concluded that the exact localization remained uncertain and that heterogeneity might exist. Puck et al. (1989) performed linkage analysis in 6 kindreds using a random pattern of T-cell X-inactivation to rule out the carrier state in at-risk women. Their findings, combined with analysis of Xq interstitial deletions, allowed assignment of the locus to Xq13.1-q21.1 and defined flanking markers for prenatal diagnosis and carrier testing. Smead et al. (1989) found no recombination among SCID, PGK1 (311800), and DXS72. DXS72 is known to be distal to SCID because males with normal immunity have been described with Xq21 interstitial deletions involving DXS72. DXS159 and DXS3 appeared to be flanking markers for SCID. Goodship et al. (1989) demonstrated no recombination between IMD4 and DXS159, PGK1, or DXS72; the maximum lod score for linkage to PGK1 was 5.03.


Molecular Genetics

In 3 unrelated patients with X-linked SCID, Noguchi et al. (1993) identified 3 different mutations in the IL2RG gene (308380.0001-308380.0003).


Population Genetics

X-linked SCID is the most common form of SCID and has been estimated to account for 46% (Buckley, 2004) to 70% of all SCID cases (Stephan et al., 1993; Fischer et al., 1997).

In a study of 108 patients with SCID, Buckley et al. (1997) found that IL2RG deficiency and JAK3 deficiency accounted for approximately 42% and approximately 6% of cases, respectively.


Nomenclature

X-linked SCID was earlier referred to as 'Swiss-type agammaglobulinemia' or thymic epithelial hypoplasia (Nezelof, 1992).

Leonard (1993) suggested that the common gamma chain of IL2R be designated gamma-c, and that X-linked SCID be termed gamma-c deficiency XSCID. X-linked severe combined immunodeficiency has been known colloquially as 'Bubble Boy disease' because it was the abnormality in a patient who lived in an isolation unit in Houston for a prolonged period.

See review by Leonard et al. (1994).


Animal Model

By somatic cell hybrid analysis and methylation differences, Deschenes et al. (1994) demonstrated that female dogs carrying X-linked SCID have the same lymphocyte-limited skewed X-chromosome inactivation patterns as human carriers. In canine XSCID, Henthorn et al. (1994) demonstrated a 4-bp deletion in the first exon of the IL2RG gene, resulting in a nonfunctional protein.

In addition to XSCID caused by mutations in the common IL2RG gene, an autosomal form of SCID (608971) with T-cell deficiency occurs in patients with a mutation in the IL7R gene (146661). IL7 (146660) is vital for B-cell development in mice, but not in humans. Ozaki et al. (2002) developed a mouse model with a phenotype resembling human XSCID by knocking out the genes for both Il4 (147780) and Il21r (605383). Mice lacking only the Il21r gene had normal B- and T-cell phenotypes and functions, with the exception of lower IgG1 and IgG2b and higher serum IgE levels. After immunization with various antigens and with the parasite Toxoplasma gondii, the normal increase in IgG1 antibodies, as well as antigen-specific IgG2b and IgG3 antibodies, was significantly lower than in wildtype mice, and there was an uncharacteristic marked increase in antigen-specific IgE responses. In contrast, mice lacking both Il4 and Il21r exhibited lower levels of IgG and IgA, but not IgM, analogous to humans with XSCID. After immunization, these double-knockout mice did not upregulate IgE, indicating that this phenomenon is Il4-dependent, nor did they upregulate the IgG subclasses. The double-knockout mice, but not mice lacking only Il4 or Il21r, had disorganized germinal centers. Ozaki et al. (2002) proposed that defective signaling by IL4 and IL21 (605384) might explain the B-cell defect in XSCID.

To investigate the origin of T-cell lymphoma risk in XSCID patients treated with IL2RG gene therapy, Woods et al. (2006) expressed IL2RG inserted into a lentiviral vector in a murine model of XSCID, and followed the fates of mice for up to 1.5 years posttransplantation. Unexpectedly, 15 (33%) of these mice developed T-cell lymphomas that were associated with a gross thymic mass. Lymphomic tissues shared a common lymphomic stem cell, with similar vector-integration sites evident in the DNA of the thymus, bone marrow, and spleen of individual mice; however, no common integration targets were found between mice. Woods et al. (2006) concluded that IL2RG itself may be oncogenic to patients. They further cautioned that any preclinical experimental treatments involving transgenes should include long-term follow-up before they enter clinical trials.


See Also:

Rosen and Janeway (1966); Simar et al. (1972)

REFERENCES

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  2. Borzy, M. S., Magenis, E., Tomar, D. Bone marrow transplantation for severe combined immune deficiency in an infant with chimerism due to intrauterine-derived maternal lymphocytes: donor engraftment documented by chromosomal marker studies. Am. J. Med. Genet. 18: 527-539, 1984. [PubMed: 6383041] [Full Text: https://doi.org/10.1002/ajmg.1320180321]

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Contributors:
Cassandra L. Kniffin - updated : 7/29/2010
Cassandra L. Kniffin - updated : 7/6/2006
Ada Hamosh - updated : 5/15/2006
Victor A. McKusick - updated : 8/11/2005
Ada Hamosh - updated : 6/15/2005
Cassandra L. Kniffin - reorganized : 10/28/2004
Cassandra L. Kniffin - updated : 10/20/2004
Ada Hamosh - updated : 2/2/2004
Ada Hamosh - updated : 10/28/2003
Victor A. McKusick - updated : 6/27/2003
Victor A. McKusick - updated : 1/24/2003
Paul J. Converse - updated : 12/3/2002
Victor A. McKusick - updated : 9/9/2002
Victor A. McKusick - updated : 5/14/2002
Ada Hamosh - updated : 5/2/2000
Victor A. McKusick - updated : 9/29/1999
Victor A. McKusick - updated : 3/12/1999
Victor A. McKusick - updated : 11/10/1998

Creation Date:
Victor A. McKusick : 6/4/1986

Edit History:
mgross : 02/11/2014
mcolton : 1/23/2014
terry : 9/25/2012
carol : 3/26/2012
terry : 1/18/2012
mgross : 12/16/2011
terry : 9/9/2010
wwang : 8/6/2010
ckniffin : 7/29/2010
carol : 12/17/2009
wwang : 9/9/2009
terry : 3/27/2009
wwang : 3/18/2009
ckniffin : 3/9/2009
wwang : 7/13/2006
ckniffin : 7/6/2006
alopez : 5/23/2006
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ckniffin : 10/27/2004
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mgross : 12/3/2002
alopez : 9/9/2002
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mgross : 10/13/1999
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mark : 6/10/1997
mark : 1/6/1997
terry : 1/3/1997
carol : 1/11/1995
jason : 6/28/1994
davew : 6/8/1994
mimadm : 3/29/1994
carol : 4/13/1993
carol : 10/27/1992