nsv3169063
- Organism: Homo sapiens
- Study:nstd158 (Cleal et al. 2019)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1,439
- Publication(s):Cleal et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 292 SVs from 18 studies. See in: genome view
Overlapping variant regions from other studies: 10 SVs from 9 studies. See in: genome view
Overlapping variant regions from other studies: 292 SVs from 18 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3169063 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000024.10 | ChrY | 56,870,713 (-351, +351) | 56,872,151 (-351, +351) |
| nsv3169063 | Remapped | Perfect | GRCh38.p12 | PATCHES | Second Pass | NW_009646209.1 | ChrY|NW_00 9646209.1 | 83,961 (-351, +351) | 85,399 (-351, +351) |
| nsv3169063 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000024.9 | ChrY | 59,016,860 (-351, +351) | 59,018,298 (-351, +351) |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14240127 | inversion | DB49 | Sequencing | Paired-end mapping | 17 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14240127 | Remapped | Perfect | NW_009646209.1:g.( 83610_84312)_(8504 8_85750)inv157 | GRCh38.p12 | Second Pass | NW_009646209.1 | ChrY|NW_00 9646209.1 | 83,961 (-351, +351) | 85,399 (-351, +351) |
| nssv14240127 | Remapped | Perfect | NC_000024.10:g.(56 870362_56871064)_( 56871800_56872502) inv157 | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 56,870,713 (-351, +351) | 56,872,151 (-351, +351) |
| nssv14240127 | Submitted genomic | NC_000024.9:g.(590 16509_59017211)_(5 9017947_59018649)i nv157 | GRCh37 (hg19) | NC_000024.9 | ChrY | 59,016,860 (-351, +351) | 59,018,298 (-351, +351) |