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nstd237 (Brandt et al. 2024)

Organism:
Human
Study Type:
Collection
Submitter:
Vivian-Pascal Brandt
Description:
Genome wide investigations on fat tissue (subcutaneous and visceral fat tissue) as well as EDTA-blood on very obese patients. See Variant Summary counts for nstd237 in dbVar Variant Summary.

Detailed Information: Download 334 Variant Regions, Download 423 Variant Calls, Download Both, FTP

Please note: This study is subject to final review before full functionality is made available on dbVar webpages. However the complete data are currently available via this FTP link.

Variant Summary

Assembly used for analysis:
Remapped: GRCh38.p14 (hg38)
Submitted: GRCh37 (hg19)

Sequence IDChrNumber of Variant RegionsNumber of Variant CallsPlacement typeLink to graphical display
NC_000001.11Chr1270RemappedNC_000001.11
NC_000002.12Chr2320RemappedNC_000002.12
NC_000003.12Chr3180RemappedNC_000003.12
NC_000004.12Chr4300RemappedNC_000004.12
NC_000005.10Chr5160RemappedNC_000005.10
NC_000006.12Chr6100RemappedNC_000006.12
NC_000007.14Chr7270RemappedNC_000007.14
NC_000008.11Chr8200RemappedNC_000008.11
NC_000009.12Chr960RemappedNC_000009.12
NC_000010.11Chr1080RemappedNC_000010.11
NC_000011.10Chr11260RemappedNC_000011.10
NC_000012.12Chr12150RemappedNC_000012.12
NC_000013.11Chr13100RemappedNC_000013.11
NC_000014.9Chr1490RemappedNC_000014.9
NC_000015.10Chr15210RemappedNC_000015.10
NC_000016.10Chr16160RemappedNC_000016.10
NC_000017.11Chr17180RemappedNC_000017.11
NC_000018.10Chr1830RemappedNC_000018.10
NC_000019.10Chr1930RemappedNC_000019.10
NC_000020.11Chr20100RemappedNC_000020.11
NC_000022.11Chr2230RemappedNC_000022.11
NW_018654707.1Chr1|NW_018654707.110RemappedNW_018654707.1
NT_187587.1Chr12|NT_187587.120RemappedNT_187587.1
NT_187660.1Chr15|NT_187660.120RemappedNT_187660.1
NW_017852933.1Chr16|NW_017852933.110RemappedNW_017852933.1
NT_187663.1Chr17|NT_187663.130RemappedNT_187663.1
NT_187562.1Chr7|NT_187562.110RemappedNT_187562.1
NW_011332701.1Chr15|NW_011332701.120RemappedNW_011332701.1
Sequence IDChrNumber of Variant RegionsNumber of Variant CallsPlacement typeLink to graphical display
NC_000001.10Chr12731SubmittedNC_000001.10
NC_000002.11Chr23244SubmittedNC_000002.11
NC_000003.11Chr31825SubmittedNC_000003.11
NC_000004.11Chr43240SubmittedNC_000004.11
NC_000005.9Chr51618SubmittedNC_000005.9
NC_000006.11Chr61215SubmittedNC_000006.11
NC_000007.13Chr72832SubmittedNC_000007.13
NC_000008.10Chr82132SubmittedNC_000008.10
NC_000009.11Chr968SubmittedNC_000009.11
NC_000010.10Chr10813SubmittedNC_000010.10
NC_000011.9Chr112629SubmittedNC_000011.9
NC_000012.11Chr121521SubmittedNC_000012.11
NC_000013.10Chr131012SubmittedNC_000013.10
NC_000014.8Chr14911SubmittedNC_000014.8
NC_000015.9Chr152123SubmittedNC_000015.9
NC_000016.9Chr161618SubmittedNC_000016.9
NC_000017.10Chr171824SubmittedNC_000017.10
NC_000018.9Chr1834SubmittedNC_000018.9
NC_000019.9Chr1936SubmittedNC_000019.9
NC_000020.10Chr201012SubmittedNC_000020.10
NC_000022.10Chr2235SubmittedNC_000022.10

Samplesets

Number of Samplesets: 1

Size:
5
Organisms:
Homo sapiens
Sampleset Phenotype(s):
None reported
  • Download Samples as CSV file
    • Samples for sampleset 1
    Sample IDCell TypeSubject ID Subject Phenotype
    1EDTA-bloodPatient 1Not reported
    2visceral fat tissuePatient 1Not reported
    3EDTA-bloodPatient 2Not reported
    4visceral fat tissuePatient 2Not reported
    5EDTA-bloodPatient 3Not reported

    Experimental Details

    Experiment IDTypeMethodAnalysisNumber of Variant Calls
    1DiscoverySNP arrayProbe signal intensity423

    Validations

    No validation data were submitted for this study.

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