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9KHV:
Structure of DdmD dimer with ssDNA without nucleotide
PDB ID:
9KHV
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MMDB ID:
259618
PDB Deposition Date:
2024/11/11
Updated in MMDB:
2025/02
Experimental Method:
electron microscopy
Resolution:
2.55 Å
Source Organism:
Vibrio cholerae O1 biovar El Tor str. N16961
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Taxonomy
Molecule
Vibrio cholerae O1 biovar El Tor str. N16961
A, B
synthetic construct
C, D
Similar Structures:
VAST+
Download sequence data
Molecular Components in 9KHV
Label
Count
Molecule
Proteins (2 molecules)
A
B
2
Helicase/uvrb N-terminal Domain-containing Protein
Nucleotides(2 molecules)
C
1
DNA (5'-d(p*ap*ap*cp*ap*tp*tp*ap*cp*ap*ap*ap*a)-3')
D
1
DNA (5'-d(p*ap*cp*ap*tp*tp*ap*cp*ap*ap*ap*ap*t)-3')
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303