9D3D: Cryo-EM structure of PGT145 R100aS Fab bound to HIV-1 BG505 DS-SOSIP.664 Env trimer

PDB ID: 9D3DDownload
MMDB ID: 257310
PDB Deposition Date: 2024/8/9
Updated in MMDB: 2024/12
Experimental Method:
electron microscopy
Resolution: 3.41  Å
Source Organism:
Human immunodeficiency virus 1▼
Similar Structures:
Biological Unit for 9D3D: octameric; determined by author
Molecular Components in 9D3D
Label Count Molecule
Proteins (8 molecules)
3
Hiv-1 Bg505 Ds-sosip Gp120
Molecule annotation
3
Bg505 Ds-sosip Glycoprotein Gp41
Molecule annotation
1
Pgt145 R100as Heavy Chain
Molecule annotation
1
Pgt145 Light Chain
Molecule annotation
Chemicals and Non-standard biopolymers (130 molecules)
1
96
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
14
beta-D-mannopyranosebeta-D-mannopyranose
3
19
alpha-D-mannopyranosealpha-D-mannopyranose
4
1
PHOSPHATE IONPHOSPHATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303