8CEP: Kasugamycin bound to the 30S body

PDB ID: 8CEPDownload
MMDB ID: 233007
PDB Deposition Date: 2023/2/2
Updated in MMDB: 2023/11
Experimental Method:
electron microscopy
Resolution: 2.04  Å
Source Organism:
Similar Structures:
Biological Unit for 8CEP: 19-meric; determined by author and by software (PISA)
Molecular Components in 8CEP
Label Count Molecule
Proteins (12 molecules)
1
Small Ribosomal Subunit Protein US4
Molecule annotation
1
Small Ribosomal Subunit Protein US5
Molecule annotation
1
Small Ribosomal Subunit Protein Bs6, Non-modified Isoform
Molecule annotation
1
Small Ribosomal Subunit Protein US8
Molecule annotation
1
Small Ribosomal Subunit Protein Us11
Molecule annotation
1
Small Ribosomal Subunit Protein Us12
Molecule annotation
1
Small Ribosomal Subunit Protein Us15
Molecule annotation
1
30S Ribosomal Protein S16
Molecule annotation
1
Small Ribosomal Subunit Protein Us17
Molecule annotation
1
Small Ribosomal Subunit Protein Bs18
Molecule annotation
1
30S Ribosomal Protein S20
Molecule annotation
1
Small Ribosomal Subunit Protein Bs21
Molecule annotation
Nucleotides(2 molecules)
1
16S rRNA
Molecule annotation
1
23S rRNA
Molecule annotation
Chemicals and Non-standard biopolymers (82 molecules)
VBCGI
5
Capreomycin IA
1
25
POTASSIUM IONPOTASSIUM ION
2
1
(1S,2R,3S,4R,5S,6S)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL 2-AMINO-4-{[CARBOXY(IMINO)METHYL]AMINO}-2,3,4,6-TETRADEOXY-ALPHA-D-ARABINO-HEXOPYRANOSIDE(1S,2R,3S,4R,5S,6S)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL 2-AMINO-4-{[CARBOXY(IMINO)METHYL]AMINO}-2,3,4,6-TETRADEOXY-ALPHA-D-ARABINO-HEXOPYRANOSIDE
3
51
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303