7MXD: Cryo-EM structure of broadly neutralizing V2-apex-targeting antibody J038 in complex with HIV-1 Env

PDB ID: 7MXDDownload
MMDB ID: 213628
PDB Deposition Date: 2021/5/19
Updated in MMDB: 2022/06
Experimental Method:
electron microscopy
Resolution: 3.4  Å
Source Organism:
Human immunodeficiency virus 1▼
Similar Structures:
Biological Unit for 7MXD: 14-meric; determined by author
Molecular Components in 7MXD
Label Count Molecule
Proteins (14 molecules)
3
Envelope Glycoprotein Gp120
Molecule annotation
3
3bnc117 Antibody Heavy Chain
Molecule annotation
3
3bnc117 Antibody Light Chain
Molecule annotation
1
J038 Antibody Heavy Chain
Molecule annotation
1
J038 Antibody Light Chain
Molecule annotation
3
Envelope Glycoprotein Gp41
Molecule annotation
Chemicals and Non-standard biopolymers (146 molecules)
1
108
2-acetamido-2-deoxy-beta-D-glucopyranose (Link to PubChem not yet available)2-acetamido-2-deoxy-beta-D-glucopyranose
2
8
beta-D-mannopyranose (Link to PubChem not yet available)beta-D-mannopyranose
3
27
alpha-D-mannopyranose (Link to PubChem not yet available)alpha-D-mannopyranose
4
3
PHOSPHATE ION (Link to PubChem not yet available)PHOSPHATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303