"Comput Struct Biotechnol J"[jour] - PMC

Yongtian Li, Bianli Gu, Lixia Ma, Li-Na He, Xiaoqiong Bao, Yuantai Huang, Rui Yang, Li Wang, Qingtao Yang, Haibo Yang, Zhixiang Zuo, Shegan Gao, Xueya Zhao, Ke Chen

Comput Struct Biotechnol J. 2025; 27: 813–820. Published online 2025 Feb 21. doi: 10.1016/j.csbj.2025.02.018

PMCID:: PMC11914901

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Testing machine learning algorithms to evaluate fluctuating and cognitive profiles in Parkinson’s disease by motion sensors and EEG data

Giovanni Mostile, Salvatore Quattropani, Federico Contrafatto, Claudio Terravecchia, Michelangelo Riccardo Caci, Alessandra Chiara, Calogero Edoardo Cicero, Giulia Donzuso, Alessandra Nicoletti, Mario Zappia

Comput Struct Biotechnol J. 2025; 27: 778–784. Published online 2025 Feb 19. doi: 10.1016/j.csbj.2025.02.019

PMCID:: PMC11910500

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SIN-Seg: A joint spatial-spectral information fusion model for medical image segmentation

Siyuan Dai, Kai Ye, Charlie Zhan, Haoteng Tang, Liang Zhan

Comput Struct Biotechnol J. 2025; 27: 744–752. Published online 2025 Feb 24. doi: 10.1016/j.csbj.2025.02.024

PMCID:: PMC11909746

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Dynamical features of smooth muscle actin pathological mutants: The arginine-257(258)-Cysteine cases

F. Chiappori, F. Di Palma, A. Cavalli, M. de Rosa, F. Viti

Comput Struct Biotechnol J. 2025; 27: 753–764. Published online 2025 Feb 17. doi: 10.1016/j.csbj.2025.02.010

PMCID:: PMC11909716

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Identifying associations between short tandem repeat sequences and gene expression in yeast reveals specific repeated motifs encoding transcriptional regulatory proteins

Zongyuan Yu, Yating Liang, Meida Xiang, Kang Xu, Xiang Xu, Dongyang Ran, Yawen Luo, Bijia Chen, Xiaochen Bo, Hebing Chen

Comput Struct Biotechnol J. 2025; 27: 705–716. Published online 2025 Feb 14. doi: 10.1016/j.csbj.2025.02.003

PMCID:: PMC11908461

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CAP-m7G: A capsule network-based framework for specific RNA N7-methylguanosine site identification using image encoding and reconstruction layers

Peilin Xie, Jiahui Guan, Xuxin He, Zhihao Zhao, Yilin Guo, Zhenglong Sun, Lantian Yao, Tzong-Yi Lee, Ying-Chih Chiang

Comput Struct Biotechnol J. 2025; 27: 804–812. Published online 2025 Feb 27. doi: 10.1016/j.csbj.2025.02.029

PMCID:: PMC11919597

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Machine learning to dissect perturbations in complex cellular systems

Pablo Monfort-Lanzas, Katja Rungger, Leonie Madersbacher, Hubert Hackl

Comput Struct Biotechnol J. 2025; 27: 832–842. Published online 2025 Feb 26. doi: 10.1016/j.csbj.2025.02.028

PMCID:: PMC11915099

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Novel metal sites revealed by spectroscopic and structural characterization of the ferric uptake regulator from Acidithiobacillus ferrooxidans

Yerko Argandoña, Andrea Olivos, Patricia Obando, Francisco Imas, Ehmke Pohl, Raquel Quatrini, Mauricio Arenas-Salinas

Comput Struct Biotechnol J. 2025; 27: 765–777. Published online 2025 Feb 19. doi: 10.1016/j.csbj.2025.02.017

PMCID:: PMC11910503

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Protein design accelerates the development and application of optogenetic tools

Lingyun Zhu, Yuxuan Wang, Xiaomin Wu, Guohua Wu, Guohao Zhang, Chuanyang Liu, Shaowei Zhang

Comput Struct Biotechnol J. 2025; 27: 717–732. Published online 2025 Feb 21. doi: 10.1016/j.csbj.2025.02.014

PMCID:: PMC11908464

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Influence of CTG repeats from the human DM1 locus on murine gut microbiota

Manijeh Mahdavi, Tae-Yeon Kim, Karine Prévost, Philippe Balthazar, Valérie Gagné-Ouellet, Isabelle Fissette-Paul Hus, Élise Duchesne, Séréna Harvey, Cynthia Gagnon, Isabelle Laforest-Lapointe, Nicolas A. Dumont, Eric Massé

Comput Struct Biotechnol J. 2025; 27: 733–743. Published online 2025 Feb 19. doi: 10.1016/j.csbj.2025.02.016

PMCID:: PMC11908463

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A two-step concept-based approach for enhanced interpretability and trust in skin lesion diagnosis

Cristiano Patrício, Luís F. Teixeira, João C. Neves

Comput Struct Biotechnol J. 2025; 28: 71–79. Published online 2025 Feb 20. doi: 10.1016/j.csbj.2025.02.013

PMCID:: PMC11907460

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Identification of novel inhibitors targeting serine acetyltransferase from Neisseria gonorrhoeae

Keely E.A. Oldham, Wanting Jiao, Erica Prentice, Joanna L. Hicks

Comput Struct Biotechnol J. 2025; 27: 682–691. Published online 2025 Feb 19. doi: 10.1016/j.csbj.2025.02.015

PMCID:: PMC11894326

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Machine and deep learning to predict viral fusion peptides

A.M. Sequeira, M. Rocha, Diana Lousa

Comput Struct Biotechnol J. 2025; 27: 692–704. Published online 2025 Feb 18. doi: 10.1016/j.csbj.2025.02.011

PMCID:: PMC11903910

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MMRT: MultiMut Recursive Tree for predicting functional effects of high-order protein variants from low-order variants

Bryce Forrest, Houssemeddine Derbel, Zhongming Zhao, Qian Liu

Comput Struct Biotechnol J. 2025; 27: 672–681. Published online 2025 Feb 18. doi: 10.1016/j.csbj.2025.02.012

PMCID:: PMC11894328

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Impact of diet on the gut mycobiome of Hong Kong Chinese infants

Jordan Yik Hei Fong, Kris Yuet Wan Lok, Man Lung Yeung, Wing Ho Li, Patrick Chiu Yat Woo, Jade Lee Lee Teng

Comput Struct Biotechnol J. 2025; 27: 661–671. Published online 2025 Feb 14. doi: 10.1016/j.csbj.2025.02.006

PMCID:: PMC11889518

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Computationally derived structural insights into Rare Earth selectivity in lanmodulin and its variants

Karuna Anna Sajeevan, Bibek Acharya, Sakib Ferdous, Dan M. Park, Joseph A. Cotruvo, Jr., Ratul Chowdhury

Comput Struct Biotechnol J. 2025; 27: 639–648. Published online 2025 Feb 14. doi: 10.1016/j.csbj.2025.02.005

PMCID:: PMC11879702

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Deep5mC: Predicting 5-methylcytosine (5mC) methylation status using a deep learning transformer approach

Evan Kinnear, Houssemeddine Derbel, Zhongming Zhao, Qian Liu

Comput Struct Biotechnol J. 2025; 27: 631–638. Published online 2025 Feb 14. doi: 10.1016/j.csbj.2025.02.007

PMCID:: PMC11879672

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Biotechnological tools boost the functional diversity of DNA-based data storage systems

Xiaoyuan Xu, Wen Wang, Zhi Ping

Comput Struct Biotechnol J. 2025; 27: 624–630. Published online 2025 Feb 6. doi: 10.1016/j.csbj.2025.02.002

PMCID:: PMC11869497

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"Comput Struct Biotechnol J"[jour] (3110)
PMC
Mus musculus myosin VIIA (Myo7a), transcript variant 2, mRNA
Mus musculus myosin VIIA (Myo7a), transcript variant 2, mRNA
gi|115511009|ref|NM_008663.2|

Nucleotide
Mus musculus adhesion G protein-coupled receptor V1 (Adgrv1), mRNA
Mus musculus adhesion G protein-coupled receptor V1 (Adgrv1), mRNA
gi|153791473|ref|NM_054053.4|

Nucleotide
usherin precursor [Mus musculus]
usherin precursor [Mus musculus]
gi|145699097|ref|NP_067383.3|

Protein
whirlin isoform 1 [Mus musculus]
whirlin isoform 1 [Mus musculus]
gi|57012340|ref|NP_082916.1|

Protein

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