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LOC9268720 uncharacterized LOC9268720 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9268720, updated on 12-Jul-2024

Summary

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Gene symbol
LOC9268720
Gene description
uncharacterized LOC9268720
Locus tag
OSNPB_080177800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1120_C08.19
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Genomic context

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See LOC9268720 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (4616042..4619805, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (4566244..4570180, complement)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene sm-like protein LSM7 Neighboring gene transfer RNA leucine (anticodon AAG) Neighboring gene vacuolar sorting protein 18 Neighboring gene sugar transport protein MST5-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA-DNA hybrid ribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC9268720
Names
Os08g0177800
P0583B06.27
putative RNase H domain-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    4616042..4619805 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026027450.2 → XP_025883235.1  uncharacterized protein LOC9268720 isoform X2

    Conserved Domains (2) summary
    cd09279
    Location:127 → 250
    RNase_HI_like; RNAse HI family that includes archaeal, some bacterial as well as plant RNase HI
    pfam01693
    Location:6 → 53
    Cauli_VI; Caulimovirus viroplasmin

  2. XM_015792943.3 → XP_015648429.1  uncharacterized protein LOC9268720 isoform X2

    Conserved Domains (2) summary
    cd09279
    Location:127 → 250
    RNase_HI_like; RNAse HI family that includes archaeal, some bacterial as well as plant RNase HI
    pfam01693
    Location:6 → 53
    Cauli_VI; Caulimovirus viroplasmin

  3. XM_015792942.3 → XP_015648428.1  uncharacterized protein LOC9268720 isoform X1

    UniProtKB/TrEMBL
    A2YRT4, A3BQ71, Q6ZBS0
    Conserved Domains (2) summary
    cd09279
    Location:208 → 331
    RNase_HI_like; RNAse HI family that includes archaeal, some bacterial as well as plant RNase HI
    pfam01693
    Location:89 → 134
    Cauli_VI; Caulimovirus viroplasmin
Nucleotide Protein
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