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TIF3C2 eukaryotic translation initiation factor 3 subunit C2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821858, updated on 19-Feb-2025

Summary

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Official Symbol
TIF3C2
Official Full Name
eukaryotic translation initiation factor 3 subunit C2
Primary source
TAIR:AT3G22860
Locus tag
AT3G22860
See related
Araport:AT3G22860
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATEIF3C-2; ATTIF3C2; EIF3C-2; EUKARYOTIC INITIATION FACTOR 3C-2; eukaryotic translation initiation factor 3 subunit C2
Summary
member of eIF3c - eukaryotic initiation factor 3c
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Genomic context

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See TIF3C2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (8090654..8093248, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Chlorophyll A-B binding family protein Neighboring gene emp24/gp25L/p24 family/GOLD family protein Neighboring gene aluminum induced protein with YGL and LRDR motifs Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene DNA repair (Rad51) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
eukaryotic translation initiation factor 3 subunit C2
NP_188926.4
  • eukaryotic translation initiation factor 3 subunit C2 (TIF3C2); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: eukaryotic translation initiation factor 3 complex; EXPRESSED IN: sperm cell, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Proteasome component (PCI) domain (InterPro:IPR000717), Eukaryotic translation initiation factor 3 subunit 8, N-terminal (InterPro:IPR008905); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3C (TAIR:AT3G56150.2); Has 741 Blast hits to 579 proteins in 226 species: Archae - 0; Bacteria - 13; Metazoa - 330; Fungi - 160; Plants - 74; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    8090654..8093248 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113186.4 → NP_188926.4  eukaryotic translation initiation factor 3 subunit C2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188926.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FF60, F4J1N5, Q9LIL2
    Conserved Domains (2) summary
    smart00088
    Location:663 → 752
    PINT; motif in proteasome subunits, Int-6, Nip-1 and TRIP-15
    pfam05470
    Location:32 → 593
    eIF-3c_N; Eukaryotic translation initiation factor 3 subunit 8 N-terminus
Nucleotide Protein
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