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LSM6B Small nuclear ribonucleoprotein family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818985, updated on 18-Sep-2024

Summary

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Official Symbol
LSM6B
Official Full Name
Small nuclear ribonucleoprotein family protein
Primary source
TAIR:AT2G43810
Locus tag
AT2G43810
See related
Araport:AT2G43810
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F18O19.8; SM-like 6B
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Genomic context

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See LSM6B in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Sequence:
Chromosome: 2; NC_003071.7 (18149197..18151295)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene MAP kinase 6 Neighboring gene corepressor Neighboring gene Actin-binding FH2 (formin homology 2) family protein Neighboring gene UDP-glucosyltransferase 74F2 Neighboring gene miscRNA Neighboring gene UDP-glycosyltransferase 74 F1 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
  2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001084583.2
NM_001337061.1
NM_129943.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Small nuclear ribonucleoprotein family protein
NP_001078052.1
  • Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT3G59810.1); Has 1180 Blast hits to 1180 proteins in 300 species: Archae - 305; Bacteria - 0; Metazoa - 337; Fungi - 255; Plants - 126; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).
NP_001318419.1
  • Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT3G59810.1); Has 1180 Blast hits to 1180 proteins in 300 species: Archae - 305; Bacteria - 0; Metazoa - 337; Fungi - 255; Plants - 126; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    18149197..18151295
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001084583.2 → NP_001078052.1  Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078052.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B9DI28, O22823
    UniProtKB/TrEMBL
    A0A178VRX5, A0A5S9X711
    Conserved Domains (1) summary
    cd01726
    Location:14 → 81
    LSm6; Like-Sm protein 6

  2. NM_001337061.1 → NP_001318419.1  Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B9DI28, O22823
    UniProtKB/TrEMBL
    A0A178VRX5, A0A5S9X711
    Conserved Domains (1) summary
    cd01726
    Location:14 → 81
    LSm6; Like-Sm protein 6

  3. NM_129943.3 → NP_181909.1  Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181909.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B9DI28, O22823
    UniProtKB/TrEMBL
    A0A178VRX5, A0A5S9X711
    Conserved Domains (1) summary
    cd01726
    Location:14 → 81
    LSm6; Like-Sm protein 6
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O22823.1

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