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LOC25493224 PAP-specific phosphatase HAL2-like [ Medicago truncatula (barrel medic) ]

Gene ID: 25493224, updated on 7-Dec-2023

Summary

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Gene symbol
LOC25493224
Gene description
PAP-specific phosphatase HAL2-like
Locus tag
MtrunA17_Chr4g0048001
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC25493224 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 4 NC_053045.1 (43832445..43835504, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 4 NC_016410.2 (35892526..35895603, complement)

Chromosome 4 - NC_053045.1Genomic Context describing neighboring genes Neighboring gene secretory carrier-associated membrane protein Neighboring gene glycine-rich cell wall structural protein 1 Neighboring gene internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial Neighboring gene sugar carrier protein C Neighboring gene endonuclease 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'(2'),5'-bisphosphate nucleotidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphatidylinositol phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sulfate assimilation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PAP-specific phosphatase HAL2-like
Names
3'(2'),5'-bisphosphate nucleotidase
putative 3'(2'),5'-bisphosphate nucleotidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053045.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    43832445..43835504 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013601651.3 → XP_013457105.1  PAP-specific phosphatase HAL2-like

    UniProtKB/TrEMBL
    A0A072UP28
    Conserved Domains (1) summary
    cl00289
    Location:82 → 450
    FIG; FIG, FBPase/IMPase/glpX-like domain. A superfamily of metal-dependent phosphatases with various substrates. Fructose-1,6-bisphospatase (both the major and the glpX-encoded variant) hydrolyze fructose-1,6,-bisphosphate to fructose-6-phosphate in ...
Nucleotide Protein
Heading Accession and Version

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