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LOC127893711 H3K4me1 hESC enhancer GRCh37_chr20:49737507-49738012 [ Homo sapiens (human) ]

Gene ID: 127893711, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127893711
Gene description
H3K4me1 hESC enhancer GRCh37_chr20:49737507-49738012
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Dec 2022]
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Genomic context

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See LOC127893711 in Genome Data Viewer
Location:
chromosome: 20
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (51120970..51121475)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (52891579..52892084)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (49737507..49738012)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:49575528-49576138 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:49606180-49607142 Neighboring gene Sharpr-MPRA regulatory region 8647 Neighboring gene molybdenum cofactor synthesis 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:49620535-49621036 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:49637285-49637848 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13038 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:49651184-49652168 Neighboring gene potassium voltage-gated channel modifier subfamily G member 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:49674148-49674648 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:49693483-49693982 Neighboring gene NANOG hESC enhancer GRCh37_chr20:49703630-49704209 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:49709053-49710038 Neighboring gene uncharacterized LOC105372661 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr20:49735490-49736325 Neighboring gene uncharacterized LOC105372662 Neighboring gene ribosomal protein SA pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13039 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13040 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:49838165-49838839 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:49838840-49839513 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:49853584-49854170 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr20:49874837-49876036 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:49922777-49923737 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:49927461-49928450 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:49928451-49929439 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:49938175-49938676 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:49944615-49945493 Neighboring gene uncharacterized LOC124904930

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_143430.1 

    Range
    101..606
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    51120970..51121475
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    52891579..52892084
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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