U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC127397009 NANOG hESC enhancer GRCh37_chr3:31167054-31167555 [ Homo sapiens (human) ]

Gene ID: 127397009, updated on 12-Sep-2024

Summary

Go to the top of the page Help
Gene symbol
LOC127397009
Gene description
NANOG hESC enhancer GRCh37_chr3:31167054-31167555
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer associates with the NANOG transcription factor. [provided by RefSeq, Oct 2022]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC127397009 in Genome Data Viewer
Location:
chromosome: 3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (31125562..31126063)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (31128066..31128567)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (31167054..31167555)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene transforming growth factor beta receptor 2 Neighboring gene KLHL25 pseudogene 1 Neighboring gene glutamate decarboxylase like 1 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_69439 Neighboring gene formin binding protein 1 pseudogene 2 Neighboring gene NANOG hESC enhancer GRCh37_chr3:30949959-30950520 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr3:31037859-31038360 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:31068205-31068399 Neighboring gene MPRA-validated peak4584 silencer Neighboring gene NANOG hESC enhancer GRCh37_chr3:31137307-31137898 Neighboring gene NANOG hESC enhancer GRCh37_chr3:31183687-31184252 Neighboring gene microRNA 466 Neighboring gene calponin 2 pseudogene 6

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_098978.1 

    Range
    101..602
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    31125562..31126063
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    31128066..31128567
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases