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LOC127270974 H3K4me1 hESC enhancer GRCh37_chr1:182990015-182990514 [ Homo sapiens (human) ]

Gene ID: 127270974, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127270974
Gene description
H3K4me1 hESC enhancer GRCh37_chr1:182990015-182990514
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Oct 2022]
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Genomic context

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See LOC127270974 in Genome Data Viewer
Location:
chromosome: 1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (183020880..183021379)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (182380056..182380557)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (182990015..182990514)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 8189 Neighboring gene keratin 18 pseudogene 28 Neighboring gene RNA, U6 small nuclear 41, pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:182991252-182991807 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:182991808-182992362 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1625 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:182992918-182993471 Neighboring gene MPRA-validated peak499 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1627 Neighboring gene laminin subunit gamma 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2210 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2209 Neighboring gene Sharpr-MPRA regulatory region 7713 Neighboring gene LAMC1 antisense RNA 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:183128249-183128750 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2211 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:183154769-183155968 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2212 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:183197656-183197861 Neighboring gene Sharpr-MPRA regulatory region 7016 Neighboring gene laminin subunit gamma 2 Neighboring gene Sharpr-MPRA regulatory region 596 Neighboring gene nicotinamide nucleotide adenylyltransferase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_092826.1 

    Range
    101..600
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    183020880..183021379
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    182380056..182380557
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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