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LOC124904839 small nucleolar RNA U13 [ Homo sapiens (human) ]

Gene ID: 124904839, updated on 27-Aug-2024

Summary

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Gene symbol
LOC124904839
Gene description
small nucleolar RNA U13
Gene type
snoRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LOC124904839 in Genome Data Viewer
Location:
1q32.1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (202231664..202231764)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (201493798..201493898)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2332 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:202182788-202183288 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:202183289-202183789 Neighboring gene Sharpr-MPRA regulatory region 5820 Neighboring gene uncharacterized LOC124904750 Neighboring gene uncharacterized LOC101929388 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:202204747-202205439 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2333 Neighboring gene leucine rich repeat containing G protein-coupled receptor 6 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:202210709-202211209 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2334 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:202233148-202233648 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:202287549-202287709 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:202305669-202306193 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:202306194-202306717 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:202310134-202310759 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1701 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:202317574-202318114 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:202328014-202328965 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:202330368-202331110 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:202331111-202331852 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:202333448-202334185 Neighboring gene ubiquitin conjugating enzyme E2 T Neighboring gene protein phosphatase 1 regulatory subunit 12B Neighboring gene CYCS pseudogene 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

General gene information

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Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    202231664..202231764
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007067435.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    201493798..201493898
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007071316.1 RNA Sequence

Nucleotide Protein
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