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LOC112267962 uncharacterized LOC112267962 [ Homo sapiens (human) ]

Gene ID: 112267962, updated on 4-Mar-2025

Summary

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Gene symbol
LOC112267962
Gene description
uncharacterized LOC112267962
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LOC112267962 in Genome Data Viewer
Location:
6q14.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (80484976..80647480)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (81693331..81855982)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene branched chain keto acid dehydrogenase E1 subunit beta Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:81148056-81149255 Neighboring gene ribosomal protein L17 pseudogene 25 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:81193272-81193889 Neighboring gene NANOG hESC enhancer GRCh37_chr6:81225104-81225623 Neighboring gene Sharpr-MPRA regulatory region 6183 Neighboring gene uncharacterized LOC105377869 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:81245601-81246800 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:81257567-81258766 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:81282770-81283340 Neighboring gene ribosomal protein SA pseudogene 72 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:81283341-81283911 Neighboring gene citrate synthase, mitochondrial-like Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:81683862-81684593 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:81914442-81915070 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:81973001-81973895 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_96007 Neighboring gene uncharacterized LOC105377871 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:82161082-82162281 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:82299236-82299424 Neighboring gene RNA, 5S ribosomal pseudogene 210

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    80484976..80647480
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_002956360.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    81693331..81855982
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007076926.1 RNA Sequence

Nucleotide Protein
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