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LOC110121237 VISTA enhancer hs1979 [ Homo sapiens (human) ]

Gene ID: 110121237, updated on 4-Mar-2025

Summary

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Gene symbol
LOC110121237
Gene description
VISTA enhancer hs1979
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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See LOC110121237 in Genome Data Viewer
Location:
chromosome: 4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (6297014..6299211)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (6271041..6273238)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (6298741..6300938)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128125818 Neighboring gene janus kinase and microtubule interacting protein 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:6071730-6072660 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:6073591-6074520 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:6087461-6088334 Neighboring gene NANOG hESC enhancer GRCh37_chr4:6089664-6090166 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:6093535-6094036 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:6107415-6107947 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:6118271-6118786 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr4:6118787-6119302 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:6119819-6120334 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21248 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21249 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:6142439-6142940 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21250 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21251 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21252 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:6192917-6193537 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21253 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21254 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21255 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21256 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15226 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15227 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21257 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21258 Neighboring gene JAKMIP1 divergent transcript Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21259 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15228 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:6247680-6248310 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:6264593-6265371 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:6266160-6267359 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15229 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:6274585-6275134 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15230 Neighboring gene wolframin ER transmembrane glycoprotein Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:6333689-6334190 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:6340800-6341378 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:6341379-6341956 Neighboring gene protein phosphatase 2 regulatory subunit Bgamma Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr4:6368797-6369537 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr4:6369538-6370278 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:6371026-6371745 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:6378434-6379114 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:6390823-6391322 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:6392177-6392889 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:6395469-6396022 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:6394915-6395468 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21260 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:6445131-6445630 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:6464699-6465244 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:6465245-6465790 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:6471820-6472650 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:6528063-6528950 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:6528951-6529838 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:6529839-6530726 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:6530727-6531613 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15231 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:6551456-6551956 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:6551957-6552457 Neighboring gene uncharacterized LOC105374365 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:6575112-6575880 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:6575881-6576648

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053852.1 

    Range
    101..2298
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    6297014..6299211
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    6271041..6273238
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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