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LINC02857 long intergenic non-protein coding RNA 2857 [ Homo sapiens (human) ]

Gene ID: 107986618, updated on 4-Mar-2025

Summary

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Official Symbol
LINC02857provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2857provided by HGNC
Primary source
HGNC:HGNC:54394
See related
Ensembl:ENSG00000230852 AllianceGenome:HGNC:54394
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02857 in Genome Data Viewer
Location:
6q14.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (84020887..84025994)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (85242578..85249391)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene RIPPLY2-CYB5R4 readthrough Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17361 Neighboring gene Sharpr-MPRA regulatory region 3398 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17362 Neighboring gene ripply transcriptional repressor 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:84615227-84615728 Neighboring gene cytochrome b5 reductase 4 Neighboring gene CRISPRi-validated cis-regulatory element chr6.3721 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:84686166-84687365 Neighboring gene MPRA-validated peak5932 silencer Neighboring gene VISTA enhancer hs2063 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:84782671-84783171 Neighboring gene melanocortin 2 receptor accessory protein 2 Neighboring gene MPRA-validated peak5934 silencer Neighboring gene centrosomal protein 162 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:84936774-84937274 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:84937275-84937775 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:84953422-84954416 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:84954417-84955409 Neighboring gene Sharpr-MPRA regulatory region 143 Neighboring gene uncharacterized LOC107986621 Neighboring gene uncharacterized LOC107986620

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    84020887..84025994
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001744233.3 RNA Sequence

    Related
    ENST00000444796.2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    85242578..85249391
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007076942.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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