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LOC107985225 uncharacterized LOC107985225 [ Homo sapiens (human) ]

Gene ID: 107985225, updated on 4-Mar-2025

Summary

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Gene symbol
LOC107985225
Gene description
uncharacterized LOC107985225
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107985225 in Genome Data Viewer
Location:
1q24.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (172815558..172817697, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (172173648..172175789, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene Fas ligand Neighboring gene Sharpr-MPRA regulatory region 4605 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1553 Neighboring gene SLC25A38 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2095 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2096 Neighboring gene uncharacterized LOC105371618 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:172812249-172812966 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2097 Neighboring gene aminoacyl tRNA synthetase complex interacting multifunctional protein 1 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    172815558..172817697 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001738297.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    172173648..172175789 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007070858.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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