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LOC107984856 uncharacterized LOC107984856 [ Homo sapiens (human) ]

Gene ID: 107984856, updated on 4-Mar-2025

Summary

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Gene symbol
LOC107984856
Gene description
uncharacterized LOC107984856
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107984856 in Genome Data Viewer
Location:
16q22.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (73996618..74006772, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (79814318..79824472, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene zinc finger homeobox 3 Neighboring gene uncharacterized LOC105371342 Neighboring gene Sharpr-MPRA regulatory region 15378 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr16:73951504-73952703 Neighboring gene uncharacterized LOC124903721 Neighboring gene Sharpr-MPRA regulatory region 11065 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr16:74060166-74060769 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr16:74062668-74063546 Neighboring gene ribosomal protein SA pseudogene 56 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:74103850-74104033 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7695 Neighboring gene uncharacterized LOC124903722 Neighboring gene MPRA-validated peak2636 silencer Neighboring gene PSMD7 divergent transcript

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    73996618..74006772 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001752251.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    79814318..79824472 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007086620.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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