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RNU6-1290P RNA, U6 small nuclear 1290, pseudogene [ Homo sapiens (human) ]

Gene ID: 106480129, updated on 4-Mar-2025

Summary

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Official Symbol
RNU6-1290Pprovided by HGNC
Official Full Name
RNA, U6 small nuclear 1290, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:48253
See related
Ensembl:ENSG00000199827 AllianceGenome:HGNC:48253
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RNU6-1290P in Genome Data Viewer
Location:
2q31.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (175029769..175029877)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (175518526..175518634)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (175894497..175894605)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ReSE screen-validated silencer GRCh37_chr2:175679928-175680086 Neighboring gene chimerin 1 Neighboring gene Sharpr-MPRA regulatory region 13906 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:175778728-175779927 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:175788643-175789389 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:175789465-175790079 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:175790080-175790693 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:175828782-175829617 Neighboring gene MPRA-validated peak3936 silencer Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:175831556-175832392 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:175869279-175869825 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12131 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12132 Neighboring gene RNA, U6 small nuclear 763, pseudogene Neighboring gene ribosomal protein L21 pseudogene 31 Neighboring gene MPRA-validated peak3937 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:175921111-175921658 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:175921659-175922204 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:175930185-175930417 Neighboring gene MPRA-validated peak3938 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:175972107-175973047 Neighboring gene activating transcription factor 2 Neighboring gene microRNA 933

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_042910.1 

    Range
    101..209
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    175029769..175029877
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    175518526..175518634
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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