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LOC105379012 uncharacterized LOC105379012 [ Homo sapiens (human) ]

Gene ID: 105379012, updated on 4-Mar-2025

Summary

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Gene symbol
LOC105379012
Gene description
uncharacterized LOC105379012
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105379012 in Genome Data Viewer
Location:
5q13.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (68483437..68512750)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (69305778..69335079)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:67489387-67489926 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16072 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16073 Neighboring gene long intergenic non-protein coding RNA 2219 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr5:67545349-67545966 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:67545967-67546584 Neighboring gene phosphoinositide-3-kinase regulatory subunit 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22630 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16074 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22631 Neighboring gene Sharpr-MPRA regulatory region 5177 Neighboring gene uncharacterized LOC105379013 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:67729541-67730740 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22633 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22634 Neighboring gene Sharpr-MPRA regulatory regions 11081 and 12221 Neighboring gene Sharpr-MPRA regulatory region 5137 Neighboring gene uncharacterized LOC105379011 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22635 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22636 Neighboring gene uncharacterized LOC105379010 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:67975383-67976582 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22637 Neighboring gene uncharacterized LOC124900991

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    68483437..68512750
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_948411.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    69305778..69335079
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007075664.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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