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LOC105375957 uncharacterized LOC105375957 [ Homo sapiens (human) ]

Gene ID: 105375957, updated on 4-Mar-2025

Summary

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Gene symbol
LOC105375957
Gene description
uncharacterized LOC105375957
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in ovary (RPKM 4.1), adrenal (RPKM 3.8) and 25 other tissues See more
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Genomic context

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See LOC105375957 in Genome Data Viewer
Location:
9p24.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (2649184..2694461, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (2655613..2697213, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101930053 Neighboring gene uncharacterized LOC105375956 Neighboring gene Sharpr-MPRA regulatory region 8982 Neighboring gene NANOG hESC enhancer GRCh37_chr9:2548993-2549494 Neighboring gene VLDLR antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28137 Neighboring gene Sharpr-MPRA regulatory region 6053 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19733 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19734 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19735 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19736 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19737 Neighboring gene very low density lipoprotein receptor Neighboring gene NANOG hESC enhancer GRCh37_chr9:2677398-2677906 Neighboring gene Sharpr-MPRA regulatory region 5035 Neighboring gene potassium voltage-gated channel modifier subfamily V member 2 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:2808488-2809363 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr9:2811115-2811988 Neighboring gene Sharpr-MPRA regulatory region 9529 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:2843124-2843685 Neighboring gene Sharpr-MPRA regulatory region 29 Neighboring gene pumilio RNA binding family member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    2649184..2694461 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_929436.3 RNA Sequence

  2. XR_929435.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    2655613..2697213 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007079882.1 RNA Sequence

  2. XR_007079883.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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