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LOC102725238 uncharacterized LOC102725238 [ Homo sapiens (human) ]

Gene ID: 102725238, updated on 4-Mar-2025

Summary

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Gene symbol
LOC102725238
Gene description
uncharacterized LOC102725238
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in ovary (RPKM 22.9), endometrium (RPKM 21.1) and 20 other tissues See more
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Genomic context

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See LOC102725238 in Genome Data Viewer
Location:
17q21.2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (42423187..42450257)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (43280464..43307259)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene signal transducer and activator of transcription 5B Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:40439573-40440073 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8520 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8521 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12193 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12194 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8522 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8523 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8524 Neighboring gene signal transducer and activator of transcription 5A Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:40480835-40481564 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:40481565-40482295 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12195 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12196 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12197 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8525 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8526 Neighboring gene signal transducer and activator of transcription 3 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8527 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8528 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12198 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12199 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12200 Neighboring gene caveolae associated protein 1 Neighboring gene RNA, U7 small nuclear 97 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12201 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8529 Neighboring gene ATPase H+ transporting V0 subunit a1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8530 Neighboring gene microRNA 548at Neighboring gene microRNA 5010

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    42423187..42450257
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_934763.2 RNA Sequence

  2. XR_007065758.1 RNA Sequence

  3. XR_934762.3 RNA Sequence

  4. XR_002958124.2 RNA Sequence

  5. XR_001752890.3 RNA Sequence

  6. XR_934764.4 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    43280464..43307259
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007087480.1 RNA Sequence

  2. XR_007087485.1 RNA Sequence

  3. XR_007087484.1 RNA Sequence

  4. XR_007087479.1 RNA Sequence

  5. XR_007087477.1 RNA Sequence

  6. XR_007087481.1 RNA Sequence

  7. XR_007087478.1 RNA Sequence

  8. XR_007087483.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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