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LOC102724968 uncharacterized LOC102724968 [ Homo sapiens (human) ]

Gene ID: 102724968, updated on 4-Mar-2025

Summary

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Gene symbol
LOC102724968
Gene description
uncharacterized LOC102724968
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC102724968 in Genome Data Viewer
Location:
20q12
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (40568570..40644090, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (42300061..42375581, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372617 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:39061739-39062240 Neighboring gene uncharacterized LOC105372618 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:39134803-39135314 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:39135315-39135826 Neighboring gene uncharacterized LOC107985435 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:39272519-39272668 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:39281495-39281994 Neighboring gene Sharpr-MPRA regulatory region 10482 Neighboring gene uncharacterized LOC105372620 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17880 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12909 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12910 Neighboring gene MAF bZIP transcription factor B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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Related articles in PubMed

  1. Common variants at 30 loci contribute to polygenic dyslipidemia. Kathiresan S, et al. Nat Genet, 2009 Jan. PMID 19060906, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Common variants at 30 loci contribute to polygenic dyslipidemia.
EBI GWAS Catalog

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    40568570..40644090 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001754596.2 RNA Sequence

  2. XR_001754597.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    42300061..42375581 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007089607.1 RNA Sequence

  2. XR_007089608.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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