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fggy FGGY carbohydrate kinase domain containing [ Salmo salar (Atlantic salmon) ]

Gene ID: 100195157, updated on 8-Mar-2024

Summary

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Gene symbol
fggy
Gene description
FGGY carbohydrate kinase domain containing
See related
Ensembl:ENSSSAG00000073915
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
fljxx
Orthologs
human zebrafish all
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Genomic context

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See fggy in Genome Data Viewer
Location:
chromosome: ssa14
Exon count:
16
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa14 NC_059455.1 (33692608..33703318, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa14 NC_027313.1 (33510558..33520995, complement)

Chromosome ssa14 - NC_059455.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123726686 Neighboring gene peroxiredoxin-6 Neighboring gene transcription factor AP-1-like Neighboring gene transcriptional adaptor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphotransferase activity, alcohol group as acceptor IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
FGGY carbohydrate kinase domain-containing protein
Names
sugar kinase FLJ10986 homolog
NP_001133658.1
XP_013996137.1
XP_013996138.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001140186.1 → NP_001133658.1  FGGY carbohydrate kinase domain-containing protein

    See identical proteins and their annotated locations for NP_001133658.1

    Status: PROVISIONAL

    Source sequence(s)
    BT045390
    UniProtKB/TrEMBL
    B5X2X1
    Related
    ENSSSAP00000099103.1, ENSSSAT00000133568.2
    Conserved Domains (2) summary
    cd07782
    Location:9 → 545
    FGGY_YpCarbK_like; Yersinia Pseudotuberculosis carbohydrate kinase-like subgroup; belongs to the FGGY family of carbohydrate kinases
    TIGR01315
    Location:10 → 545
    5C_CHO_kinase; FGGY-family pentulose kinase

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059455.1 Reference Ssal_v3.1

    Range
    33692608..33703318 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014140663.2 → XP_013996138.1  FGGY carbohydrate kinase domain-containing protein isoform X2

    UniProtKB/TrEMBL
    A0A1S3LZ01
    Related
    ENSSSAP00000099216.2, ENSSSAT00000133692.2
    Conserved Domains (2) summary
    cd07782
    Location:9 → 504
    FGGY_YpCarbK_like; Yersinia Pseudotuberculosis carbohydrate kinase-like subgroup; belongs to the FGGY family of carbohydrate kinases
    TIGR01315
    Location:10 → 504
    5C_CHO_kinase; FGGY-family pentulose kinase

  2. XM_014140662.2 → XP_013996137.1  FGGY carbohydrate kinase domain-containing protein isoform X1

    UniProtKB/TrEMBL
    B5X2X1
    Conserved Domains (2) summary
    cd07782
    Location:9 → 545
    FGGY_YpCarbK_like; Yersinia Pseudotuberculosis carbohydrate kinase-like subgroup; belongs to the FGGY family of carbohydrate kinases
    TIGR01315
    Location:10 → 545
    5C_CHO_kinase; FGGY-family pentulose kinase
Nucleotide Protein
Heading Accession and Version

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