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dbVar

Database of genomic structural variation

nsv870417

Organism: Homo sapiens

Study:nstd53 (Tuttelmann et al. 2011)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:NCBI36 (hg18)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:174,108

Publication(s):Tüttelmann et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 622 SVs from 60 studies. See in: genome view

Remapped(Score: Pass):103,921,190-104,095,297

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv870417	Remapped	Pass	GRCh38.p12	Primary Assembly	First Pass	NC_000023.11	ChrX	103,921,190	103,921,190	104,095,297	104,095,297
nsv870417	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000023.10	ChrX	103,175,773	103,179,645	103,303,380	103,339,981
nsv870417	Remapped	Pass	GRCh37.p13	PATCHES	Second Pass	NW_004070885.1	ChrX\|NW_00 4070885.1	57,606	57,606	231,713	231,713
nsv870417	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000023.9	ChrX	103,062,429	103,066,301	103,190,036	103,226,637

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1499049	copy number gain	OAT_25	Oligo aCGH	Probe signal intensity	25

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1499049	Remapped	Pass	NC_000023.11:g.(10 3921190_103921190) _(104095297_104095 297)dup	GRCh38.p12	First Pass	NC_000023.11	ChrX	103,921,190	103,921,190	104,095,297	104,095,297
nssv1499049	Remapped	Pass	NW_004070885.1:g.( 57606_57606)_(2317 13_231713)dup	GRCh37.p13	Second Pass	NW_004070885.1	ChrX\|NW_00 4070885.1	57,606	57,606	231,713	231,713
nssv1499049	Remapped	Perfect	NC_000023.10:g.(10 3175773_103179645) _(103303380_103339 981)dup	GRCh37.p13	First Pass	NC_000023.10	ChrX	103,175,773	103,179,645	103,303,380	103,339,981
nssv1499049	Submitted genomic		NC_000023.9:g.(103 062429_103066301)_ (103190036_1032266 37)dup	NCBI36 (hg18)		NC_000023.9	ChrX	103,062,429	103,066,301	103,190,036	103,226,637

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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