nsv3403835
- Organism: Homo sapiens
- Study:nstd162 (Audano et al. 2019)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh38 (hg38)
- Variant Calls:11
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Audano et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 596 SVs from 21 studies. See in: genome view
Overlapping variant regions from other studies: 596 SVs from 21 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3403835 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000023.11 | ChrX | 1,652,107 | 1,652,107 | ||
| nsv3403835 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000023.10 | ChrX | 1,771,000 | 1,771,000 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14794420 | alu insertion | SAMN05603729 | Sequencing | de novo and local sequence assembly | 24,108 |
| nssv14797833 | alu insertion | SAMN02744161 | Sequencing | de novo and local sequence assembly | 20,941 |
| nssv14804291 | alu insertion | SAMN05603745 | Sequencing | de novo and local sequence assembly | 27,447 |
| nssv14806605 | alu insertion | SAMN04229548 | Sequencing | de novo and local sequence assembly | 23,009 |
| nssv14807800 | alu insertion | SAMN09643900 | Sequencing | de novo and local sequence assembly | 26,631 |
| nssv14808666 | alu insertion | SAMN06885952 | Sequencing | de novo and local sequence assembly | 28,070 |
| nssv14808862 | alu insertion | SAMN09651199 | Sequencing | de novo and local sequence assembly | 27,381 |
| nssv14809762 | alu insertion | SAMN05603847 | Sequencing | de novo and local sequence assembly | 26,021 |
| nssv14809872 | alu insertion | SAMN03838746 | Sequencing | de novo and local sequence assembly | 26,336 |
| nssv14810260 | alu insertion | SAMN04229552 | Sequencing | de novo and local sequence assembly | 24,632 |
| nssv14812018 | alu insertion | SAMN04251426 | Sequencing | de novo and local sequence assembly | 22,074 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14794420 | Submitted genomic | NC_000023.11:g.165 2107_1652108ins133 | GRCh38 (hg38) | NC_000023.11 | ChrX | 1,652,107 | 1,652,107 | ||
| nssv14797833 | Submitted genomic | NC_000023.11:g.165 2107_1652108ins133 | GRCh38 (hg38) | NC_000023.11 | ChrX | 1,652,107 | 1,652,107 | ||
| nssv14804291 | Submitted genomic | NC_000023.11:g.165 2107_1652108ins133 | GRCh38 (hg38) | NC_000023.11 | ChrX | 1,652,107 | 1,652,107 | ||
| nssv14806605 | Submitted genomic | NC_000023.11:g.165 2107_1652108ins133 | GRCh38 (hg38) | NC_000023.11 | ChrX | 1,652,107 | 1,652,107 | ||
| nssv14807800 | Submitted genomic | NC_000023.11:g.165 2107_1652108ins133 | GRCh38 (hg38) | NC_000023.11 | ChrX | 1,652,107 | 1,652,107 | ||
| nssv14808666 | Submitted genomic | NC_000023.11:g.165 2107_1652108ins133 | GRCh38 (hg38) | NC_000023.11 | ChrX | 1,652,107 | 1,652,107 | ||
| nssv14808862 | Submitted genomic | NC_000023.11:g.165 2107_1652108ins133 | GRCh38 (hg38) | NC_000023.11 | ChrX | 1,652,107 | 1,652,107 | ||
| nssv14809762 | Submitted genomic | NC_000023.11:g.165 2107_1652108ins133 | GRCh38 (hg38) | NC_000023.11 | ChrX | 1,652,107 | 1,652,107 | ||
| nssv14809872 | Submitted genomic | NC_000023.11:g.165 2107_1652108ins133 | GRCh38 (hg38) | NC_000023.11 | ChrX | 1,652,107 | 1,652,107 | ||
| nssv14810260 | Submitted genomic | NC_000023.11:g.165 2107_1652108ins133 | GRCh38 (hg38) | NC_000023.11 | ChrX | 1,652,107 | 1,652,107 | ||
| nssv14812018 | Submitted genomic | NC_000023.11:g.165 2107_1652108ins133 | GRCh38 (hg38) | NC_000023.11 | ChrX | 1,652,107 | 1,652,107 | ||
| nssv14794420 | Remapped | Perfect | NC_000023.10:g.177 1000_1771001ins133 NC_000023.10:g.177 1000_1771001ins133 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 1,771,000 | 1,771,000 |
| nssv14797833 | Remapped | Perfect | NC_000023.10:g.177 1000_1771001ins133 NC_000023.10:g.177 1000_1771001ins133 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 1,771,000 | 1,771,000 |
| nssv14804291 | Remapped | Perfect | NC_000023.10:g.177 1000_1771001ins133 NC_000023.10:g.177 1000_1771001ins133 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 1,771,000 | 1,771,000 |
| nssv14806605 | Remapped | Perfect | NC_000023.10:g.177 1000_1771001ins133 NC_000023.10:g.177 1000_1771001ins133 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 1,771,000 | 1,771,000 |
| nssv14807800 | Remapped | Perfect | NC_000023.10:g.177 1000_1771001ins133 NC_000023.10:g.177 1000_1771001ins133 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 1,771,000 | 1,771,000 |
| nssv14808666 | Remapped | Perfect | NC_000023.10:g.177 1000_1771001ins133 NC_000023.10:g.177 1000_1771001ins133 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 1,771,000 | 1,771,000 |
| nssv14808862 | Remapped | Perfect | NC_000023.10:g.177 1000_1771001ins133 NC_000023.10:g.177 1000_1771001ins133 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 1,771,000 | 1,771,000 |
| nssv14809762 | Remapped | Perfect | NC_000023.10:g.177 1000_1771001ins133 NC_000023.10:g.177 1000_1771001ins133 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 1,771,000 | 1,771,000 |
| nssv14809872 | Remapped | Perfect | NC_000023.10:g.177 1000_1771001ins133 NC_000023.10:g.177 1000_1771001ins133 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 1,771,000 | 1,771,000 |
| nssv14810260 | Remapped | Perfect | NC_000023.10:g.177 1000_1771001ins133 NC_000023.10:g.177 1000_1771001ins133 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 1,771,000 | 1,771,000 |
| nssv14812018 | Remapped | Perfect | NC_000023.10:g.177 1000_1771001ins133 NC_000023.10:g.177 1000_1771001ins133 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 1,771,000 | 1,771,000 |