nsv2786824
- Organism: Homo sapiens
- Study:nstd132 (Walker et al. 2017)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:93,994
- Publication(s):Walker et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 429 SVs from 49 studies. See in: genome view
Overlapping variant regions from other studies: 429 SVs from 49 studies. See in: genome view
Overlapping variant regions from other studies: 171 SVs from 9 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv2786824 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000023.11 | ChrX | 138,900,785 | 138,994,778 |
| nsv2786824 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000023.10 | ChrX | 137,982,947 | 138,076,940 |
| nsv2786824 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000023.9 | ChrX | 137,810,613 | 137,904,606 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv13676513 | copy number loss | CGPQ-1675 | SNP array | Genotyping | 5 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv13676513 | Remapped | Perfect | NC_000023.11:g.(?_ 138900785)_(138994 778_?)del | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 138,900,785 | 138,994,778 |
| nssv13676513 | Remapped | Perfect | NC_000023.10:g.(?_ 137982947)_(138076 940_?)del | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 137,982,947 | 138,076,940 |
| nssv13676513 | Submitted genomic | NC_000023.9:g.(?_1 37810613)_(1379046 06_?)del | NCBI36 (hg18) | NC_000023.9 | ChrX | 137,810,613 | 137,904,606 |