Pathogen: clinical or host-associated sample from ... - BioSample - NCBI

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Pathogen: clinical or host-associated sample from Escherichia coli O117

Identifiers: BioSample: SAMN08395806; SRA: SRS2868599; CFSAN: CFSAN049662

Organism: Escherichia coli O117
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli

Package: Pathogen: clinical or host-associated; version 1.0

Attributes

isolate name alias	CFSAN049662,702241027
strain	MOD1-EC5416
isolation source	cloacae duck
Interagency Food Safety Analytics Collaboration (IFSAC) category	veterinary clinical/research\| other animal
source type	animal
collection date	2007-03-06
geographic location	USA
host	avian
latitude and longitude	missing
collected by	Pennsylvania State University\| Escherichia coli Reference Center
host disease	missing
food product origin geographic location	USA:WA
project name	GenomeTrakr
sequenced by	Pennsylvania State University\| Escherichia coli Reference Center
attribute_package	clinical/host-associated
ontological term	cloacae:CURATION_0000491\| duck:FOODON_03411316
PublicAccession	CFSAN049662
ProjectAccession	PRJNA230969
Species	coli
Genus	Escherichia

BioProject: PRJNA230969 Escherichia
Retrieve all samples from this project

Submission: FDA Center for Food Safety and Applied Nutrition, Edward Dudley; 2018-01-25

Accession:: SAMN08395806
ID:: 8395806

BioProject SRA Nucleotide

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Pathogen: clinical or host-associated sample from Escherichia coli O117
Pathogen: clinical or host-associated sample from Escherichia coli O117

biosample
Escherichia coli O117 strain MOD1-EC5416, whole genome shotgun sequencing projec...
Escherichia coli O117 strain MOD1-EC5416, whole genome shotgun sequencing project
gi|1829650032|gb|AASCAZ000000000.1| Z010000000

Nucleotide
Pathogen: environmental/food/other sample from Escherichia coli O8:H9
Pathogen: environmental/food/other sample from Escherichia coli O8:H9

biosample
Escherichia coli O8:H9 strain MOD1-EC5419, whole genome shotgun sequencing proje...
Escherichia coli O8:H9 strain MOD1-EC5419, whole genome shotgun sequencing project
gi|1829650000|gb|AASCAY000000000.1| Y010000000

Nucleotide
Pathogen: environmental/food/other sample from Escherichia coli O25:H4
Pathogen: environmental/food/other sample from Escherichia coli O25:H4

biosample

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