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Pathogen: environmental/food/other sample from Escherichia coli

Identifiers: BioSample: SAMN12603128; SRA: SRS5285927; CFSAN: CFSAN096716

Organism: Escherichia coli
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia

Package: Pathogen: environmental/food/other; version 1.0

Attributes

isolation source	urine
Interagency Food Safety Analytics Collaboration (IFSAC) category	veterinary clinical/research\| companion animal
source type	animal
strain	ECOL-18-VL-OH-GA-0043
collection date	2018-11-02
geographic location	USA: GA
isolate name alias	CFSAN096716
collected by	University of Georgia College of Veterinary Medicine Athens Veterinary Diagnostic Laboratory
latitude and longitude	Not Provided
host	Canis lupus familiaris
project name	Vet-LIRN
sequenced by	Ohio Department of Agriculture\|Animal Disease Diagnostic Laboratory
PublicAccession	CFSAN096716
attribute_package	environmental/food/other
Genus	Escherichia
Species	coli
ProjectAccession	PRJNA318589
ontological term	canis lupus familiaris:NCBITAXON_9615, urine:UBERON_0001088

BioProject: PRJNA318589 Escherichia coli
Retrieve all samples from this project

Submission: CFSAN; 2019-08-19

Antibiogram
Antibiotic	Resistance phenotype	Measurement sign	Measurement	Measurement units	Laboratory typing method	Laboratory typing platform	Vendor	Laboratory typing method version or reagent	Testing standard
amikacin	not defined	<=	4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cefpodoxime	not defined	<=	1	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
ceftazidime	not defined	<=	4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
enrofloxacin	not defined	<=	0.12	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
imipenem	not defined	<=	1	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
marbofloxacin	not defined	<=	0.12	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
orbifloxacin	not defined	<=	1	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
piperacillin-tazobactam	not defined	<=	8/4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
tetracycline	not defined	<=	4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
trimethoprim-sulfamethoxazole	not defined	<=	0.5/9.5	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
pradofloxacin	not defined	<=	0.25	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
amoxicillin-clavulanic acid	not defined	==	4/2	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
ampicillin	not defined	==	4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cephalexin	not defined	==	8	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cefazolin	not defined	==	2	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cefovecin	not defined	==	1	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
chloramphenicol	not defined	==	8	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
doxycycline	not defined	==	2	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
gentamicin	not defined	==	1	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI

Accession:: SAMN12603128
ID:: 12603128

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Pathogen: environmental/food/other sample from Escherichia coli
Pathogen: environmental/food/other sample from Escherichia coli

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288601[BioProject] AND wgs master[prop] (30020)
Nucleotide
288601[BioProject] (30865)
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"pathogen cl 1 0"[filter] (1782782)
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