Human Microbiome Project (HMP) Demonstration Proje... (ID 46305) - BioProject

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Accession: PRJNA46305 ID: 46305

Human Microbiome Project (HMP) Demonstration Projects

The human microbiome and human health and disease

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This project is a component of the NIH Human Microbiome Project (HMP) Roadmap Project

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3 additional projects are components of the NIH Human Microbiome Project (HMP) Roadmap Project.

HMP demonstration projects were developed to investigate the potential relationship of changes in the human microbiota to human health and disease. High throughput genomics technologies were used to assess whether the microbiota in a specific region on/in the human body plays a role in contributing to health status.

Accession	PRJNA46305
Type	Umbrella project (Subtype:Funding initiative)
Submission	Registration date: 3-Mar-2010 NIH Human Microbiome Consortium
NCBI Links	NCBI Project: HMP Roadmap
Related Resources	NIH HMP DACC

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	298060
WGS master	634
Genomic DNA	297332
SRA Experiments	23858
Capillary Traces (Trace Archive)	1
Protein Sequences	5543
Publications
PubMed	8
PMC	8
Other datasets
BioSample	22248
Genotype and Phenotype (dbGaP)	15
Assembly	635

SRA Data Details

Parameter	Value
Data volume, Gbases	11,599
Data volume, Tbytes	6.47

Human Microbiome Project (HMP) Demonstration Projects encompasses the following 22 sub-projects:

Project Type

Number of Projects

Genome sequencing

Highest level of assembly :

Chromosomes
Contigs
Total

1
1
2

BioProject accession	Assembly level	Organism	Title
PRJNA46333	Contigs	human skin metagenome	Gene-Environment Interactions at the Skin Surface (NISC - NIH Intramural Sequencing...)
PRJNA46877	Chromosomes	human vaginal metagenome	The Vaginal Microbiome: Disease, Genetics and the Environment (Virginia Commonwealth University)

Phenotype or Genotype

BioProject accession	Organism	Title
PRJNA46307	human metagenome	Foregut microbiome in development of esophageal adenocarcinoma (New York University School...)
PRJNA46309	human metagenome	Evaluation of the cutaneous microbiome in psoriasis (New York University School...)
PRJNA46311	human metagenome	The Vaginal Microbiome: Disease, Genetics and the Environment (Virginia Commonwealth University)
PRJNA46313	human metagenome	Diet, Genetic Factors, and the Gut Microbiome in Crohn's Disease (University of Pennsylvania)
PRJNA46315	human metagenome	The Role of the Gut Microbiota in Ulcerative Colitis, targeted gene survey (University of Michigan at...)

List all 17 'Phenotype or Genotype' projects...

BioProject accession	Organism	Title
PRJNA46307	human metagenome	Foregut microbiome in development of esophageal adenocarcinoma (New York University School...)
PRJNA46309	human metagenome	Evaluation of the cutaneous microbiome in psoriasis (New York University School...)
PRJNA46311	human metagenome	The Vaginal Microbiome: Disease, Genetics and the Environment (Virginia Commonwealth University)
PRJNA46313	human metagenome	Diet, Genetic Factors, and the Gut Microbiome in Crohn's Disease (University of Pennsylvania)
PRJNA46315	human metagenome	The Role of the Gut Microbiota in Ulcerative Colitis, targeted gene survey (University of Michigan at...)
PRJNA46317	human metagenome	Urethral Microbiome of Adolescent Males (Indiana Univ-Purdue Univ...)
PRJNA46319	human metagenome	The Thrifty Microbiome: The Role of the Gut Microbiota in Obesity in the Amish (University of Maryland Baltimore)
PRJNA46321	human metagenome	Metagenomic Analysis of the Structure and Function of the Human Gut Microbiota in Crohn's Disease (University of Maryland Baltimore)
PRJNA46323	human metagenome	Effect of Crohn's Disease Risk Alleles on Enteric Microbiota (Washington University)
PRJNA46327	human metagenome	Metagenomic study of the human skin microbiome associated with acne (University of California...)
PRJNA46331	human metagenome	The Microbial Ecology of Bacterial Vaginosis: A Fine Scale Resolution Metagenomic Study (University of Maryland Baltimore)
PRJNA46335	human metagenome	The Human Virome In Children And Its Relationship To Febrile Illness (Washington University)
PRJNA46337	human metagenome	The Neonatal Microbiome and Necrotizing Enterocolitis (Washington University)
PRJNA46339	human metagenome	The Human Microbiome in Pediatric Abdominal Pain and Intestinal Inflammation (Baylor College of Medicine)
PRJNA46879	human metagenome	Diet, Genetic Factors, and the Gut Microbiome in Crohn's Disease (University of Pennsylvania)
PRJNA46881	human metagenome	The Role of the Gut Microbiota in Ulcerative Colitis, whole metagenome sequencing project (University of Michigan at...)
PRJNA50637	human metagenome	The Role of the Gut Microbiota in Ulcerative Colitis, functional gene metagenomics (University of Michigan at...)

Less...

metagenome

BioProject accession	Organism	Title
PRJNA824804	human gut metagenome	Foregut microbiome in development of esophageal adenocarcinoma Metagenome (Lawrence Berkeley National...)

targeted loci

BioProject accession	Organism	Title
PRJNA174514	human gut metagenome	16S Sequencing of Human Gut Microbiome in Crohn's Disease Metagenome (University of Maryland Institute...)
PRJNA288581	human gut metagenome	Effect of Crohn's Disease Risk Alleles on Enteric Microbiota set 2 (Stony Brook University)

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Human Microbiome Project (HMP) Demonstration Projects

The human microbiome and human health and disease

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