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Accession: PRJNA237212 ID: 237212

Salmonella enterica subsp. enterica

GenomeTrakr real-time SE: Minnesota Department of Health

See Genome Information for Salmonella enterica
Surveillance of Salmonella Enteritidis using SNP based phylogenetic analysis. GenomeTrakr Project: Minnesota Department of Health
AccessionPRJNA237212
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismSalmonella enterica subsp. enterica[Taxonomy ID: 59201]
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica; Salmonella enterica subsp. enterica
SubmissionRegistration date: 6-Dec-2018
Minnesota Department of Health
Related Resources
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)692
SRA Experiments720
Other datasets
BioSample700
Assembly692
Assembly details:
Assembly levelNumber of Assemblies
692
692
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_003869395.1ContigRSHL00000000SAMN02737350
MDH-2014-00793
GCA_003873135.1ContigRSSM00000000SAMN03782422
15MN00229
GCA_004219765.1ContigAAACQH000000000SAMN02647025
MDH-2014-00252
GCA_004218355.1ContigAAACNM000000000SAMN02647010
MDH-2014-00237
GCA_005958745.1ContigAAEENM000000000SAMN04448150
E2016001421
GCA_007763775.1ContigAAIUMY000000000SAMN02741943
MDH-2014-00798
GCA_007763155.1ContigAAIUMD000000000SAMN04858541
E2016005028
GCA_007750975.1ContigAAITPU000000000SAMN03487590
15MN00098
GCA_007752335.1ContigAAITSL000000000SAMN03854529
15MN00276
GCA_007753395.1ContigAAITUP000000000SAMN04102373
E2015012021
GCA_008032535.1ContigAAJLLV000000000SAMN03154479
MDH-2014-01007
GCA_008026335.1ContigAAJLBV000000000SAMN03253030
MDH-2014-01067
GCA_008027005.1ContigAAJLCS000000000SAMN03264370
MDH-2014-01080
GCA_008026975.1ContigAAJLCT000000000SAMN03264369
MDH-2014-01079
GCA_008026895.1ContigAAJLCR000000000SAMN03264368
MDH-2014-01078
GCA_008027095.1ContigAAJLFJ000000000SAMN03287039
15MN00020
GCA_008027215.1ContigAAJLGX000000000SAMN03104700
MDH-2014-00977
GCA_008007885.1ContigAAJJVR000000000SAMN03069793
MDH-2014-00967
GCA_008080475.1ContigAAJONF000000000SAMN02947307
MDH-2014-00886
GCA_008048095.1ContigAAJMGL000000000SAMN03013635
MDH-2014-00935
GCA_008047955.1ContigAAJMGG000000000SAMN03013636
MDH-2014-00936
GCA_008047835.1ContigAAJMFR000000000SAMN03009075
MDH-2014-00931
GCA_008047765.1ContigAAJMGE000000000SAMN03009077
MDH-2014-00933
GCA_008047735.1ContigAAJMFP000000000SAMN03009073
MDH-2014-00929
GCA_008047215.1ContigAAJMEI000000000SAMN02988849
MDH-2014-00905
GCA_008046835.1ContigAAJMDC000000000SAMN02952862
MDH-2014-00900
GCA_008046735.1ContigAAJMHA000000000SAMN03013637
MDH-2014-00937
GCA_008046755.1ContigAAJMDH000000000SAMN02952860
MDH-2014-00898
GCA_008046375.1ContigAAJMCT000000000SAMN02950971
MDH-2014-00896
GCA_008046275.1ContigAAJMCA000000000SAMN02947310
MDH-2014-00889
GCA_008046295.1ContigAAJMCC000000000SAMN02947316
MDH-2014-00895
GCA_008046185.1ContigAAJMBZ000000000SAMN02947306
MDH-2014-00885
GCA_008046175.1ContigAAJMBV000000000SAMN02947308
MDH-2014-00887
GCA_008046195.1ContigAAJMCD000000000SAMN02947313
MDH-2014-00892
GCA_008046135.1ContigAAJMFO000000000SAMN03001974
MDH-2014-00909
GCA_008046085.1ContigAAJMBY000000000SAMN02947314
MDH-2014-00893
GCA_008046015.1ContigAAJMBR000000000SAMN02947315
MDH-2014-00894
GCA_008045955.1ContigAAJMEY000000000SAMN03001973
MDH-2014-00908
GCA_008045975.1ContigAAJMBU000000000SAMN02937345
MDH-2014-00882
GCA_008045915.1ContigAAJMBX000000000SAMN02937346
MDH-2014-00883
GCA_008045875.1ContigAAJMGC000000000SAMN03001975
MDH-2014-00910
GCA_008045855.1ContigAAJMBW000000000SAMN02947305
MDH-2014-00884
GCA_008045815.1ContigAAJMFU000000000SAMN03001977
MDH-2014-00912
GCA_008045795.1ContigAAJMEB000000000SAMN02988850
MDH-2014-00906
GCA_008045775.1ContigAAJMDZ000000000SAMN02952861
MDH-2014-00899
GCA_008045695.1ContigAAJMBL000000000SAMN02937334
MDH-2014-00855
GCA_008045555.1ContigAAJMBI000000000SAMN02937335
MDH-2014-00856
GCA_008045565.1ContigAAJMBF000000000SAMN02937342
MDH-2014-00879
GCA_008045535.1ContigAAJMBH000000000SAMN02937336
MDH-2014-00857
GCA_008045515.1ContigAAJMBG000000000SAMN02937331
MDH-2014-00852
GCA_008045455.1ContigAAJMBE000000000SAMN02937329
MDH-2014-00850
GCA_008045425.1ContigAAJMBD000000000SAMN02937332
MDH-2014-00853
GCA_008045375.1ContigAAJMAV000000000SAMN02937343
MDH-2014-00880
GCA_008068615.1ContigAAJNUT000000000SAMN03079641
MDH-2014-00971
GCA_008068055.1ContigAAJNTG000000000SAMN03069792
MDH-2014-00966
GCA_008067915.1ContigAAJNUW000000000SAMN03092689
MDH-2014-00972
GCA_008067635.1ContigAAJNUZ000000000SAMN03092692
MDH-2014-00975
GCA_008067155.1ContigAAJNPA000000000SAMN03018147
MDH-2014-00942
GCA_008066375.1ContigAAJNPQ000000000SAMN03018146
MDH-2014-00941
GCA_008065895.1ContigAAJNMW000000000SAMN03009074
MDH-2014-00930
GCA_008065755.1ContigAAJNMQ000000000SAMN03001976
MDH-2014-00911
GCA_008065715.1ContigAAJNNS000000000SAMN03013639
MDH-2014-00939
GCA_008065535.1ContigAAJNRS000000000SAMN03019770
MDH-2014-00946
GCA_008065475.1ContigAAJNPX000000000SAMN03018145
MDH-2014-00940
GCA_008045235.1ContigAAJMHD000000000SAMN03013634
MDH-2014-00934
GCA_008044675.1ContigAAJMBC000000000SAMN02937330
MDH-2014-00851
GCA_008044695.1ContigAAJMBB000000000SAMN02937341
MDH-2014-00878
GCA_008044615.1ContigAAJMBA000000000SAMN02937333
MDH-2014-00854
GCA_008029675.1ContigAAJLFI000000000SAMN03287040
15MN00021
GCA_008029575.1ContigAAJLFO000000000SAMN03291716
15MN00024
GCA_008029455.1ContigAAJLHC000000000SAMN03104699
MDH-2014-00976
GCA_008028935.1ContigAAJLFP000000000SAMN03291714
15MN00022
GCA_008028895.1ContigAAJLFR000000000SAMN03291717
15MN00025
GCA_008028835.1ContigAAJLFS000000000SAMN03291720
15MN00028
GCA_008028775.1ContigAAJLFL000000000SAMN03291718
15MN00026
GCA_008028715.1ContigAAJLFG000000000SAMN03287035
15MN00003
GCA_008028735.1ContigAAJLFH000000000SAMN03287036
15MN00004
GCA_008028695.1ContigAAJLFF000000000SAMN03287034
15MN00002
GCA_008028795.1ContigAAJLFQ000000000SAMN03291719
15MN00027
GCA_008028595.1ContigAAJLFB000000000SAMN03277870
MDH-2014-01089
GCA_008028275.1ContigAAJLEJ000000000SAMN03277871
15MN00001
GCA_008031515.1ContigAAJLJT000000000SAMN02979338
MDH-2014-00902
GCA_008031015.1ContigAAJLJE000000000SAMN03121878
MDH-2014-00979
GCA_008030915.1ContigAAJLKF000000000SAMN03142752
MDH-2014-00987
GCA_008030675.1ContigAAJLIU000000000SAMN03108707
MDH-2014-00978
GCA_008030475.1ContigAAJLJH000000000SAMN02979339
MDH-2014-00903
GCA_008025475.1ContigAAJKZK000000000SAMN03218569
MDH-2014-01062
GCA_008025335.1ContigAAJKZH000000000SAMN03202046
MDH-2014-01053
GCA_008025275.1ContigAAJKZE000000000SAMN03202045
MDH-2014-01052
GCA_008025175.1ContigAAJKZB000000000SAMN03198661
MDH-2014-01029
GCA_008024995.1ContigAAJKYZ000000000SAMN03202047
MDH-2014-01054
GCA_008024955.1ContigAAJKZC000000000SAMN03202043
MDH-2014-01050
GCA_008024655.1ContigAAJKXO000000000SAMN03195967
MDH-2014-01022
GCA_008024595.1ContigAAJKXP000000000SAMN03195965
MDH-2014-01018
GCA_008024615.1ContigAAJKXQ000000000SAMN03195964
MDH-2014-01017
GCA_008024575.1ContigAAJKXT000000000SAMN03195966
MDH-2014-01021
GCA_008024475.1ContigAAJKXV000000000SAMN03195962
MDH-2014-01015
GCA_008024435.1ContigAAJKXN000000000SAMN03195963
MDH-2014-01016
GCA_008024395.1ContigAAJKYX000000000SAMN03202044
MDH-2014-01051
GCA_006651185.1ContigAAFWOA000000000SAMN03782421
15MN00228
GCA_006690405.1ContigAAFZKA000000000SAMN02646986
MDH-2014-00213
GCA_006689665.1ContigAAFZIS000000000SAMN03009076
MDH-2014-00932
GCA_006632985.1ContigAAFVEV000000000SAMN03418503
15MN00092
GCA_006632105.1ContigAAFVDK000000000SAMN02647021
MDH-2014-00248
GCA_006631745.1ContigAAFVBH000000000SAMN03092691
MDH-2014-00974
GCA_006631185.1ContigAAFVCM000000000SAMN03344764
15MN00050
GCA_006755965.1ContigAAGEJS000000000SAMN03375125
15MN00059
GCA_006754385.1ContigAAGEET000000000SAMN02988851
MDH-2014-00907
GCA_006753135.1ContigAAGEGZ000000000SAMN02646978
MDH-2014-00205
GCA_006822605.1ContigAAGITX000000000SAMN03838745
15MN00245
GCA_006821965.1ContigAAGIUY000000000SAMN06157928
I2016019079-1
GCA_006812325.1ContigAAGICE000000000SAMN02646993
MDH-2014-00220
GCA_006881625.1ContigAAGNBS000000000SAMN04191574
E2015014785
GCA_007191355.1ContigAAHGWS000000000SAMN04490772
I2016001827
GCA_007217895.1ContigAAHHIY000000000SAMN04577086
E2016003976
GCA_007217845.1ContigAAHHJG000000000SAMN04577090
E2016004273
GCA_007231035.1ContigAAHJNU000000000SAMN06217839
E2016019994
GCA_010015285.1ContigAANCML000000000SAMN02646990
MDH-2014-00217
GCA_010015185.1ContigAANCMH000000000SAMN02894302
MDH-2014-00836
GCA_010368765.1ContigAANPDN000000000SAMN02647016
MDH-2014-00243
GCA_010372385.1ContigAANPJZ000000000SAMN03743663
15MN00172
GCA_010371945.1ContigAANPJQ000000000SAMN03782416
15MN00223
GCA_010457325.1ContigAANUTR000000000SAMN02777639
MDH-2014-00804
GCA_010440235.1ContigAANTTL000000000SAMN04530608
E2016002889
GCA_010438815.1ContigAANTQX000000000SAMN03487621
15MN00137
GCA_010512895.1ContigAANYKQ000000000SAMN03968891
15MN00380
GCA_010566785.1ContigAAOCEB000000000SAMN03838740
15MN00240
GCA_010532855.1ContigAANZXC000000000SAMN03332947
15MN00029
GCA_010537075.1ContigAAOAEK000000000SAMN02777637
MDH-2014-00802
GCA_010535005.1ContigAAOACB000000000SAMN02646977
MDH-2014-00204
GCA_010533515.1ContigAANZXV000000000SAMN02646989
MDH-2014-00216
GCA_010942205.1ContigAAPBQZ000000000SAMN02646983
MDH-2014-00210
GCA_010941555.1ContigAAPBNT000000000SAMN03332949
15MN00031
GCA_010950995.1ContigAAPCBZ000000000SAMN02647026
MDH-2014-00253
GCA_010908165.1ContigAAOZBV000000000SAMN02647030
MDH-2014-00255
GCA_010907685.1ContigAAOZBM000000000SAMN02647018
MDH-2014-00245
GCA_010923395.1ContigAAOXMK000000000SAMN02767384
MDH-2014-00800
GCA_010923775.1ContigAAOXNA000000000SAMN02646975
MDH-2014-00202
GCA_010877365.1ContigAAOVYU000000000SAMN03291715
15MN00023
GCA_010870225.1ContigAAOVKP000000000SAMN02647020
MDH-2014-00247
GCA_010868785.1ContigAAOVHZ000000000SAMN02797526
MDH-2014-00808
GCA_010565925.1ContigAAOCCJ000000000SAMN03487619
15MN00135
GCA_010564215.1ContigAAOBZN000000000SAMN02850981
MDH-2014-00824
GCA_010667145.1ContigAAOHNS000000000SAMN03763905
15MN00203
GCA_010635705.1ContigAAOFNG000000000SAMN03013638
MDH-2014-00938
GCA_010635625.1ContigAAOFNI000000000SAMN02850983
MDH-2014-00826
GCA_010641385.1ContigAAOFYK000000000SAMN03375129
15MN00063
GCA_010647245.1ContigAAOGHF000000000SAMN02947309
MDH-2014-00888
GCA_010633305.1ContigAAOFJT000000000SAMN02947312
MDH-2014-00891
GCA_010715015.1ContigAAOLQB000000000SAMN04350624
E2015018531
GCA_010713255.1ContigAAOLKH000000000SAMN03703924
15MN00163
GCA_010713235.1ContigAAOLLG000000000SAMN03387496
15MN00071
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15MN00210
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15MN00090
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MDH-2014-00799
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MDH-2014-00226
GCA_010700695.1ContigAAOJNL000000000SAMN02647007
MDH-2014-00234
GCA_010700165.1ContigAAOJMC000000000SAMN02726036
MDH-2014-00782
GCA_010699665.1ContigAAOJLH000000000SAMN02947311
MDH-2014-00890
GCA_010698725.1ContigAAOJJT000000000SAMN02937344
MDH-2014-00881
GCA_010698045.1ContigAAOJFW000000000SAMN02988848
MDH-2014-00904
GCA_010696705.1ContigAAOJHY000000000SAMN02952859
MDH-2014-00897
GCA_010703505.1ContigAAOJRP000000000SAMN03360854
15MN00056
GCA_010702155.1ContigAAOJPS000000000SAMN02646984
MDH-2014-00211
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MDH-2014-00901
GCA_010688425.1ContigAAOHRT000000000SAMN03770704
15MN00212
GCA_009152995.1ContigAAMCOD000000000SAMN06112902
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GCA_009119705.1ContigAALXTB000000000SAMN06217838
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MDH-2014-00828
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MDH-2014-00969
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MDH-2014-00968
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MDH-2014-00944
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MDH-2014-00945
GCA_008114065.1ContigAAJQKX000000000SAMN03418500
15MN00089
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15MN00070
GCA_008113085.1ContigAAJQLA000000000SAMN03418499
15MN00088
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15MN00069
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MDH-2014-00781
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MDH-2014-00250
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MDH-2014-00225
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MDH-2014-00811
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15MN00036
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MDH-2014-00848
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MDH-2014-00849
GCA_011454935.1ContigAAQBFX000000000SAMN02905671
MDH-2014-00846
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MDH-2014-00973
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MDH-2014-00844
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MDH-2014-00832
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MDH-2014-00847
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MDH-2014-00825
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MDH-2014-00827
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MDH-2014-00816
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MDH-2014-00817
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MDH-2014-00815
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MDH-2014-00783
GCA_011450215.1ContigAAQAXC000000000SAMN02730156
MDH-2014-00790
GCA_011450135.1ContigAAQAWL000000000SAMN02728798
MDH-2014-00787
GCA_011450075.1ContigAAQAWM000000000SAMN02767385
MDH-2014-00801
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MDH-2014-00785
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MDH-2014-00227
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MDH-2014-00239
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MDH-2014-00805
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MDH-2014-00789
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GCA_011088905.1ContigAAPGAE000000000SAMN03332952
15MN00034
GCA_011081325.1ContigAAPFPS000000000SAMN02719536
MDH-2014-00778
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MDH-2014-00784
GCA_011087545.1ContigAAPFUM000000000SAMN02646996
MDH-2014-00223
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15MN00051
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MDH-2014-00241
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15MN00060
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MDH-2014-00242
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MDH-2014-00246
GCA_011084565.1ContigAAPFUG000000000SAMN02647009
MDH-2014-00236
GCA_011084545.1ContigAAPFTE000000000SAMN02647013
MDH-2014-00240
GCA_011084525.1ContigAAPFTI000000000SAMN02647001
MDH-2014-00228
GCA_011084505.1ContigAAPFTF000000000SAMN02647005
MDH-2014-00232
GCA_011093265.1ContigAAPGFE000000000SAMN03332957
15MN00043
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15MN00042
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15MN00062
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15MN00032
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MDH-2014-00212
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15MN00054
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MDH-2014-00810
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GCA_010938975.1ContigAAPBIR000000000SAMN03332953
15MN00035
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MDH-2014-00812
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MDH-2014-00797
GCA_010967055.1ContigAAPAGI000000000SAMN02647022
MDH-2014-00249
GCA_010950975.1ContigAAPCEU000000000SAMN03360855
15MN00057
GCA_014435105.1ContigAAVVBB000000000SAMN05776225
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GCA_014434665.1ContigAAVVBI000000000SAMN05452971
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GCA_014435305.1ContigAAVVBV000000000SAMN04572928
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GCA_014435625.1ContigAAVVBZ000000000SAMN04529448
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GCA_008912745.2ContigAALNZW000000000SAMN05224064
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GCA_008906065.2ContigAALNOF000000000SAMN04942955
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GCA_008909445.2ContigAALNTO000000000SAMN05179430
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GCA_008912795.2ContigAALNZX000000000SAMN05224067
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GCA_008911425.2ContigAALNXA000000000SAMN05224065
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GCA_008912865.2ContigAALNZT000000000SAMN05224062
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GCA_008905485.2ContigAALNOB000000000SAMN04942954
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GCA_008647295.2ContigAAKZDI000000000SAMN03838739
15MN00239
GCA_006822045.2ContigAAGIVF000000000SAMN06144667
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GCA_008847365.2ContigAALJIC000000000SAMN04519545
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GCA_008906445.2ContigAALNNY000000000SAMN04942961
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GCA_008906145.2ContigAALNPR000000000SAMN04942956
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GCA_008843525.2ContigAALJAL000000000SAMN04519544
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GCA_008911435.2ContigAALNXB000000000SAMN05209859
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GCA_008941125.2ContigAALPIL000000000SAMN05521652
I2016011392
GCA_008941105.2ContigAALPIN000000000SAMN05521655
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GCA_008941145.2ContigAALPIS000000000SAMN05521651
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GCA_007230495.2ContigAAHJMJ000000000SAMN05521653
I2016011284
GCA_008916065.2ContigAALOGI000000000SAMN04313593
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GCA_008940685.2ContigAALPIM000000000SAMN05521654
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GCA_008916125.2ContigAALOGO000000000SAMN04313592
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GCA_016334095.1ContigAAYGJI000000000SAMN04559908
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GCA_016334715.1ContigAAYGKJ000000000SAMN04625398
E2016004789
GCA_016335555.1ContigAAYGLV000000000SAMN04858552
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GCA_016335515.1ContigAAYGLT000000000SAMN04893605
E2016005692
GCA_016335475.1ContigAAYGLY000000000SAMN04858544
E2016005076
GCA_016331185.1ContigAAYGDY000000000SAMN04225985
E2015015342
GCA_016332125.1ContigAAYGFE000000000SAMN04350617
E2015017909
GCA_016331965.1ContigAAYGFM000000000SAMN04191573
E2015014738
GCA_016331905.1ContigAAYGFK000000000SAMN04225984
E2015015299
GCA_016327085.1ContigAAYFVR000000000SAMN04102386
E2015012817
GCA_016327005.1ContigAAYFVN000000000SAMN04161372
E2015014267
GCA_016326985.1ContigAAYFVH000000000SAMN04161374
E2015014375
GCA_016326965.1ContigAAYFVK000000000SAMN04126323
E2015013909
GCA_016326665.1ContigAAYFVS000000000SAMN04102377
E2015012170
GCA_016326645.1ContigAAYFUR000000000SAMN04498908
E2016002209
GCA_016326605.1ContigAAYFUQ000000000SAMN04498910
E2016002341
GCA_016326445.1ContigAAYFUJ000000000SAMN04625397
E2016004753
GCA_016326125.1ContigAAYFUH000000000SAMN04625399
E2016004805
GCA_016325885.1ContigAAYFTX000000000SAMN04893601
E2016005458
GCA_016332385.1ContigAAYGGE000000000SAMN04217880
E2015014853
GCA_016332345.1ContigAAYGGC000000000SAMN04225986
E2015015391
GCA_016226245.1ContigAAYAVP000000000SAMN04992710
I2016006642
GCA_016226145.1ContigAAYAVQ000000000SAMN04992714
E2016006813
GCA_016579285.1ContigAAYQOR000000000SAMN04942953
I2016005701-2
GCA_016376705.1ContigAAYIYT000000000SAMN04102385
E2015012816
GCA_016376645.1ContigAAYIYM000000000SAMN04225981
E2015015239
GCA_016376625.1ContigAAYIYO000000000SAMN04126324
E2015013832
GCA_016376585.1ContigAAYIYN000000000SAMN04225982
E2015015240
GCA_016375885.1ContigAAYIXG000000000SAMN04539777
E2016003457
GCA_016375785.1ContigAAYIWZ000000000SAMN04594907
I2016004512-1
GCA_016375705.1ContigAAYIXA000000000SAMN04594901
E2016004518
GCA_016375425.1ContigAAYIWD000000000SAMN05330286
E2016009735
SRA Data Details
ParameterValue
Data volume, Gbases316
Data volume, Tbytes0.19

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