9KI0: structure of DdmD dimer with ssDNA with AGS

PDB ID: 9KI0Download
MMDB ID: 259620
PDB Deposition Date: 2024/11/11
Updated in MMDB: 2025/02
Experimental Method:
electron microscopy
Resolution: 2.65  Å
Source Organism:
Vibrio cholerae O1 biovar El Tor str. N16961▼
Similar Structures:
Biological Unit for 9KI0: tetrameric; determined by author
Molecular Components in 9KI0
Label Count Molecule
Proteins (2 molecules)
2
Helicase/uvrb N-terminal Domain-containing Protein
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(p*cp*tp*tp*tp*tp*tp*tp*tp*tp*t)-3')
Molecule annotation
1
DNA (5'-d(p*tp*tp*tp*tp*tp*tp*tp*tp*tp*t)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
1
2
PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTERPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
2
2
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303