9DR1: E. coli RNA polymerase consensus volume with a bound fluoride riboswitch in the ligand-bound state

PDB ID: 9DR1Download
MMDB ID: 259422
PDB Deposition Date: 2024/9/24
Updated in MMDB: 2025/02
Experimental Method:
electron microscopy
Resolution: 3.7  Å
Source Organism:
Similar Structures:
Biological Unit for 9DR1: octameric; determined by author
Molecular Components in 9DR1
Label Count Molecule
Proteins (5 molecules)
2
DNA-directed RNA Polymerase Subunit Alpha
Molecule annotation
1
DNA-directed RNA Polymerase Subunit Beta
Molecule annotation
1
DNA-directed RNA Polymerase Subunit Beta'
Molecule annotation
1
DNA-directed RNA Polymerase Subunit Omega
Molecule annotation
Nucleotides(3 molecules)
1
DNA (39-mer)
Molecule annotation
1
DNA (30-mer)
Molecule annotation
1
RNA (5'-r(p*up*gp*gp*up*ap*gp*gp*ap*gp*u)-3')
Molecule annotation
Chemical and Non-standard biopolymers (1 molecule)
1
1
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303