Actinobacteria
. Nocardia farcinica IFM 10152 ............................................ 1 hit
. Streptomyces avermitilis MA-4680 ........................................ 3 hits
. Streptomyces coelicolor A3(2) ........................................... 2 hits
. Thermobifida fusca YX ................................................... 1 hit
Cyanobacteria
. Anabaena variabilis ATCC 29413 .......................................... 3 hits
. Nostoc sp. PCC 7120 ..................................................... 4 hits
. Synechocystis sp. PCC 6803 .............................................. 1 hit
. Thermosynechococcus elongatus BP-1 ...................................... 1 hit
Alpha-proteobacteria
. Silicibacter pomeroyi DSS-3 ............................................. 1 hit
Beta-proteobacteria
. Chromobacterium violaceum ATCC 12472 .................................... 2 hits
. Dechloromonas aromatica RCB ............................................. 1 hit
Gamma-proteobacteria
. Erwinia carotovora subsp. atroseptica SCRI1043 .......................... 0 hits*
. Escherichia coli K12 .................................................... 0 hits*
. Escherichia coli O157:H7 ................................................ 0 hits*
. Idiomarina loihiensis L2TR .............................................. 1 hit*
. Methylococcus capsulatus str. Bath ...................................... 2 hits
. Photobacterium profundum SS9 ............................................ 0 hits*
. Photorhabdus luminescens subsp. laumondii TTO1 .......................... 0 hits*
. Pseudomonas aeruginosa PAO1 ............................................. 2 hits
. Pseudomonas fluorescens Pf-5 ............................................ 2 hits
. Pseudomonas putida KT2440 ............................................... 3 hits
. Pseudomonas syringae pv. tomato str. DC3000 ............................. 2 hits
. Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150... 0 hits*
. Salmonella enterica subsp. enterica serovar Typhi str. CT18 ............. 0 hits*
. Salmonella typhimurium LT2 .............................................. 0 hits*
. Shewanella oneidensis MR-1 .............................................. 1 hit*
. Shigella flexneri 2a str. 301 ........................................... 0 hits*
. Shigella sonnei Ss046 ................................................... 0 hits*
. Vibrio cholerae O1 biovar eltor str. N16961 ............................. 1 hits*
. Vibrio fischeri ES114 ................................................... 1 hits*
. Vibrio parahaemolyticus RIMD 2210633 .................................... 1 hits*
. Vibrio vulnificus CMCP6 ................................................. 1 hits*
. Yersinia pestis CO92 .................................................... 0 hits*
. Yersinia pseudotuberculosis IP 32953 .................................... 0 hits*
Delta-proteobacteria
. Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough ............... 1 hit
. Geobacter sulfurreducens PCA ............................................ 1 hit
Epsilon-proteobacteria
. Wolinella succinogenes DSM 1740 ......................................... 2 hits
Firmicutes
. Bacillus anthracis str. Ames ............................................ 1 hit
. Bacillus cereus ATCC 14579 .............................................. 1 hit
. Bacillus thuringiensis serovar konkukian str. 97-27 ..................... 1 hit
CFB/Green sulfur bacteria group
. Bacteroides fragilis YCH46 .............................................. 1 hit
Spirochaetes
. Leptospira interrogans serovar Lai str. 56601 ........................... 2 hits
*Hnr-type (RssB, SprE, MviA) response regulators with degraded PP2C-type output domain,
encoded in enterobacteria and some other gamma-proteobacteria, are marked with asterisks.
Actinobacteria
Nocardia farcinica IFM 10152
nfa1520 gi|54022116|ref|YP_116358.1| hypothetical protein nfa1520 ... BLink CDD UniProt Pfam
Streptomyces avermitilis MA-4680
SAV2371 gi|29828913|ref|NP_823547.1| putative magnesium or manganes... BLink CDD UniProt Pfam
SAV4009 gi|29830552|ref|NP_825186.1| putative magnesium or manganes... BLink CDD UniProt Pfam
SAV5983 gi|29832526|ref|NP_827160.1| putative two-component system ... BLink CDD UniProt Pfam
Streptomyces coelicolor A3(2)
SCO0872 gi|21219393|ref|NP_625172.1| conserved hypothetical protei... BLink CDD UniProt Pfam
SCO4201 gi|21222597|ref|NP_628376.1| conserved hypothetical protei... BLink CDD UniProt Pfam
Thermobifida fusca YX
Tfu_2344 gi|72162743|ref|YP_290400.1| response regulator receiver:P... BLink CDD UniProt Pfam
Cyanobacteria
Anabaena variabilis ATCC 29413
Ava_0662 gi|75906885|ref|YP_321181.1| Response regulator receiver (... BLink CDD UniProt Pfam
Ava_1566 gi|75907788|ref|YP_322084.1| Response regulator receiver (... BLink CDD UniProt Pfam
Ava_3723 gi|75909927|ref|YP_324223.1| Response regulator receiver (... BLink CDD UniProt Pfam
Nostoc sp. PCC 7120
all3759 gi|17132893|dbj|BAB75458.1| two-component response regulat... BLink CDD UniProt Pfam
alr1086 gi|17130432|dbj|BAB73043.1| two-component response regulat... BLink CDD UniProt Pfam
alr2280 gi|17131371|dbj|BAB73979.1| two-component response regulat... BLink CDD UniProt Pfam
all1703 gi|17135523|dbj|BAB78069.1| two-component response regulat... BLink CDD UniProt Pfam
Synechocystis sp. PCC 6803
slr1983 gi|16330817|ref|NP_441545.1| regulatory components of sens... BLink CDD UniProt Pfam
Thermosynechococcus elongatus BP-1
tlr1153 gi|22298696|ref|NP_681943.1| two-component response regula... BLink CDD UniProt Pfam
Alpha-proteobacteria
Silicibacter pomeroyi DSS-3
SPO0022 gi|56694950|ref|YP_165295.1| response regulator [Silicibac... BLink CDD UniProt Pfam
Beta-proteobacteria
Chromobacterium violaceum ATCC 12472
CV2644 gi|34498099|ref|NP_902314.1| probable two-component respon... BLink CDD UniProt Pfam
CV3505 gi|34498960|ref|NP_903175.1| probable two-component respon... BLink CDD UniProt Pfam
Dechloromonas aromatica RCB
Daro_0347 gi|71905989|ref|YP_283576.1| PAS [Dechloromonas aromatica ... BLink CDD UniProt Pfam
Gamma-proteobacteria
Erwinia carotovora subsp. atroseptica SCRI1043
*ECA2330 gi|50121258|ref|YP_050425.1| response regulator [Erwinia c... BLink CDD UniProt Pfam
Escherichia coli K12
*b1235 gi|16129196|ref|NP_415751.1| HNR_ECOLI Hnr protein [Esche... BLink CDD UniProt Pfam
Escherichia coli O157:H7
*ECs1737 gi|13361202|dbj|BAB35160.1| HNR_ECOLI Hnr protein [Escher... BLink CDD UniProt Pfam
Idiomarina loihiensis L2TR
REC-PP2C-RsbW
IL1713 gi|56460814|ref|YP_156095.1| Response regulator of sigma s... BLink CDD UniProt Pfam
*IL1096 gi|56460204|ref|YP_155485.1| Response regulator of sigma s... BLink CDD UniProt Pfam
Methylococcus capsulatus str. Bath
MCA0833 gi|53805026|ref|YP_113331.1| response regulator [Methyloco... BLink CDD UniProt Pfam
MCA1440 gi|53804207|ref|YP_113897.1| response regulator [Methyloco... BLink CDD UniProt Pfam
Photobacterium profundum SS9
*PBPRA2645 gi|54309805|ref|YP_130825.1| hypothetical response regulat... BLink CDD UniProt Pfam
Photorhabdus luminescens subsp. laumondii TTO1
*plu2502 gi|37526394|ref|NP_929738.1| Hnr protein [Photorhabdus lum... BLink CDD UniProt Pfam
Pseudomonas aeruginosa PAO1
PA2798 gi|15597994|ref|NP_251488.1| probable two-component respon... BLink CDD UniProt Pfam
REC-PP2C-RsbW
PA3346 gi|15598542|ref|NP_252036.1| probable two-component respon... BLink CDD UniProt Pfam
Pseudomonas fluorescens Pf-5
PFL_1972 gi|70729354|ref|YP_259091.1| response regulator [Pseudomon... BLink CDD UniProt Pfam
REC-PP2C-RsbW
PFL_1644 gi|70729036|ref|YP_258770.1| response regulator [Pseudomon... BLink CDD UniProt Pfam
Pseudomonas putida KT2440
PP2165 gi|26988889|ref|NP_744314.1| response regulator [Pseudomon... BLink CDD UniProt Pfam
PP3545 gi|26990257|ref|NP_745682.1| sensory box histidine kinase/... BLink CDD UniProt Pfam
REC-PP2C-RsbW
PP4363 gi|26991052|ref|NP_746477.1| sensor histidine kinase/respo... BLink CDD UniProt Pfam
Pseudomonas syringae pv. tomato str. DC3000
PSPTO1483 gi|28868690|ref|NP_791309.1| response regulator/EAL domain... BLink CDD UniProt Pfam
REC-PP2C-RsbW
PSPTO1964 gi|28869168|ref|NP_791787.1| response regulator [Pseudomon... BLink CDD UniProt Pfam
Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
*SPA1125 gi|56413323|ref|YP_150398.1| putative regulatory protein ... BLink CDD UniProt Pfam
Salmonella enterica subsp. enterica serovar Typhi str. CT18
*STY1297 gi|16760130|ref|NP_455747.1| putative regulatory protein [... BLink CDD UniProt Pfam
Salmonella typhimurium LT2
*STM1753 gi|16765097|ref|NP_460712.1| response regulator [Salmonell... BLink CDD UniProt Pfam
Shewanella oneidensis MR-1
REC-PP2C-RsbW
SO2119 gi|24373679|ref|NP_717722.1| response regulator [Shewanell... BLink CDD UniProt Pfam
*SO3196 gi|24374708|ref|NP_718751.1| response regulator [Shewanell... BLink CDD UniProt Pfam
Shigella flexneri 2a str. 301
*SF1235 gi|24112631|ref|NP_707141.1| Hnr protein [Shigella flexner... BLink CDD UniProt Pfam
Shigella sonnei Ss046
*SSO_1944 gi|74312428|ref|YP_310847.1| Hnr protein [Shigella sonnei ... BLink CDD UniProt Pfam
Vibrio cholerae O1 biovar eltor str. N16961
REC-PP2C-RsbW
VCA1086 gi|15601836|ref|NP_233467.1| response regulator [Vibrio ch... BLink CDD UniProt Pfam
*VC1050 gi|15641063|ref|NP_230695.1| response regulator [Vibrio ch... BLink CDD UniProt Pfam
Vibrio fischeri ES114
VFA1024 gi|59714207|ref|YP_206982.1| transcriptional regulator [Vi... BLink CDD UniProt Pfam
*VF1689 gi|59712296|ref|YP_205072.1| Hnr protein [Vibrio fischeri ... BLink CDD UniProt Pfam
Vibrio parahaemolyticus RIMD 2210633
VPA1049 gi|28900904|ref|NP_800559.1| putative two-component respon... BLink CDD UniProt Pfam
*VP2183 gi|28898957|ref|NP_798562.1| response regulator [Vibrio pa... BLink CDD UniProt Pfam
Vibrio vulnificus CMCP6
REC-PP2C-RsbW
VV21158 gi|27367540|ref|NP_763067.1| Serine phosphatase RsbU, regu... BLink CDD UniProt Pfam
*VV11999 gi|27365342|ref|NP_760870.1| Response regulator [Vibrio vu... BLink CDD UniProt Pfam
Yersinia pestis CO92
*YPO2173 gi|16122404|ref|NP_405717.1| probable response regulator ... BLink CDD UniProt Pfam
Yersinia pseudotuberculosis IP 32953
*YPTB2099 gi|51596425|ref|YP_070616.1| probable response regulator ... BLink CDD UniProt Pfam
Delta-proteobacteria
Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
DVU1451 gi|46579862|ref|YP_010670.1| response regulator [Desulfovi... BLink CDD UniProt Pfam
Geobacter sulfurreducens PCA
GSU0700 gi|39995806|ref|NP_951757.1| sensory box/response regulato... BLink CDD UniProt Pfam
Epsilon-proteobacteria
Wolinella succinogenes DSM 1740
WS0693 gi|34557104|ref|NP_906919.1| TWO-COMPONENT RESPONSE REGULA... BLink CDD UniProt Pfam
WS2113 gi|34558396|ref|NP_908211.1| hypothetical protein WS2113 [... BLink CDD UniProt Pfam
Firmicutes
Bacillus anthracis str. Ames
BA0994 gi|30261118|ref|NP_843495.1| response regulator [Bacillus a... BLink CDD UniProt Pfam
Bacillus cereus ATCC 14579
BC1006 gi|30019161|ref|NP_830792.1| Sigma factor sigB regulation ... BLink CDD UniProt Pfam
Bacillus thuringiensis serovar konkukian str. 97-27
BT9727_0915 gi|49480182|ref|YP_035254.1| sigma factor sigB regulation... BLink CDD UniProt Pfam
CFB/Green sulfur bacteria group
Bacteroides fragilis YCH46
BF2968 gi|53714258|ref|YP_100250.1| sigma factor SigB regulation ... BLink CDD UniProt Pfam
Spirochaetes
Leptospira interrogans serovar Lai str. 56601
LA2921 gi|24215620|ref|NP_713101.1| two-component response regula... BLink CDD UniProt Pfam
LA3514 gi|24216213|ref|NP_713694.1| two-component response regula... BLink CDD UniProt Pfam
Please send corrections, questions and comments to Michael Galperin