C-di-GMP phosphodiesterase class II (HD-GYP) domains in Alpha-proteobacteria
Alpha-proteobacteria
. Agrobacterium sp. H13-3 ........................... 2 hits
. Agrobacterium tumefaciens str. C58 ................ 1 hit
. Agrobacterium vitis S4 ............................ 2 hits
. Asticcacaulis excentricus CB 48 ................... 1 hit
. Azorhizobium caulinodans ORS 571 .................. 1 hit
. Azospirillum brasilense Sp245 ..................... 5 hits
. Azospirillum lipoferum 4B ......................... 7 hits
. Azospirillum sp. B510 ............................. 6 hits
. Bradyrhizobium japonicum USDA 110 ................. 3 hits
. Bradyrhizobium sp. BTAi1 .......................... 3 hits
. Bradyrhizobium sp. ORS278 ......................... 2 hits
. Bradyrhizobium sp. S23321 ......................... 3 hits
. Gluconobacter oxydans 621H ........................ 1 hit
. Magnetococcus marinus MC-1 ........................ 16 hits
. Magnetospirillum magneticum AMB-1 ................. 16 hits
. Mesorhizobium australicum WSM2073 ................. 1 hit
. Mesorhizobium loti MAFF303099 ..................... 1 hit
. Mesorhizobium opportunistum WSM2075 ............... 1 hit
. Methylobacterium chloromethanicum CM4 ............. 7 hits
. Methylobacterium extorquens PA1 ................... 6 hits
. Methylobacterium nodulans ORS 2060 ................ 3 hits
. Methylobacterium populi BJ001 ..................... 4 hits
. Methylobacterium radiotolerans JCM 2831 ........... 6 hits
. Methylobacterium sp. 4-46 ......................... 6 hits
. Micavibrio aeruginosavorus ARL-13 ................. 1 hit
. Nitrobacter hamburgensis X14 ...................... 1 hit
. Nitrobacter winogradskyi Nb-255 ................... 1 hit
. Novosphingobium aromaticivorans DSM 12444 ......... 1 hit
. Novosphingobium sp. PP1Y .......................... 1 hit
. Oligotropha carboxidovorans OM5 ................... 1 hit
. Pelagibacterium halotolerans B2 ................... 3 hits
. Polymorphum gilvum SL003B-26A1 .................... 0 hits*
. Rhizobium etli CFN 42 ............................. 1 hits
. Rhizobium leguminosarum bv. viciae 3841 ........... 3 hits
. Rhodopseudomonas palustris CGA009 ................. 2 hits
. Rhodospirillum centenum SW ........................ 2 hits
. Rhodospirillum photometricum DSM 122 .............. 6 hits
. Rhodospirillum rubrum ATCC 11170 .................. 2 hits
. Sphingobium chlorophenolicum L-1 .................. 1 hit
. Sphingobium sp. SYK-6 ............................. 2 hits
. Sphingomonas wittichii RW1 ........................ 1 hit
. Tistrella mobilis KA081020-065 .................... 3 hits
Alpha-proteobacteria
Agrobacterium sp. H13-3
AGROH133_07939 ADY65193 phosphohydrolase [Ag... BLink CDD UniProt Pfam InterPro
AGROH133_08640 ADY65450 metal dependent phos... BLink CDD UniProt Pfam InterPro
Agrobacterium fabrum str. C58
Atu2291 AAK88033 hypothetical protein AGR_... BLink CDD UniProt Pfam InterPro
Agrobacterium vitis S4
Avi_4319 ACM38135 Metal dependent phosphohy... BLink CDD UniProt Pfam InterPro
Avi_0523 ACM35371 Response regulator protei... BLink CDD UniProt Pfam InterPro
Asticcacaulis excentricus CB 48
Astex_0290 ADU11988 metal dependent phosphoh... BLink CDD UniProt Pfam InterPro
Azorhizobium caulinodans ORS 571
AZC_0914 BAF86912 metal-dependent phosphohy... BLink CDD UniProt Pfam InterPro
Azospirillum brasilense Sp245
AZOBR_p220080 CCD01617 response regulator rp... BLink CDD UniProt Pfam InterPro
AZOBR_p310161 CCD02419 response regulator R ... BLink CDD UniProt Pfam InterPro
AZOBR_p350017 CCD03001 protein of unknown fu... BLink CDD UniProt Pfam InterPro
AZOBR_10031 CCC96244 two-component respons... BLink CDD UniProt Pfam InterPro
AZOBR_10185 CCC96398 putative response reg... BLink CDD UniProt Pfam InterPro
Azospirillum lipoferum 4B
AZOLI_0112 CBS85530 putative two-component... BLink CDD UniProt Pfam InterPro
AZOLI_0850 CBS86194 hypothetical protein A... BLink CDD UniProt Pfam InterPro
AZOLI_2822 CBS88005 putative phosphohydrol... BLink CDD UniProt Pfam InterPro
AZOLI_p30098 CBS89945 putative metal depende... BLink CDD UniProt Pfam InterPro
AZOLI_p40426 CBS90808 Putative two-component... BLink CDD UniProt Pfam InterPro
AZOLI_p40644 CBS90999 putative two-component... BLink CDD UniProt Pfam InterPro
AZOLI_p50096 CBS91101 Two-component response... BLink CDD UniProt Pfam InterPro
Azospirillum sp. B510
AZL_001680 BAI70806 two-component response r... BLink CDD UniProt Pfam InterPro
AZL_022830 BAI72921 two-component system res... BLink CDD UniProt Pfam InterPro
AZL_025960 BAI73234 two-component response r... BLink CDD UniProt Pfam InterPro
AZL_c02170 BAI75510 two-component system res... BLink CDD UniProt Pfam InterPro
AZL_d00790 BAI75905 two-component response r... BLink CDD UniProt Pfam InterPro
AZL_d01790 BAI76005 two-component response r... BLink CDD UniProt Pfam InterPro
Bradyrhizobium japonicum USDA 110
blr0842 BAC46107 hypothetical protein blr0... BLink CDD UniProt Pfam InterPro
bll2340 BAC47605 two-component response re... BLink CDD UniProt Pfam InterPro
bll4192 BAC49457 hypothetical protein bll4... BLink CDD UniProt Pfam InterPro
Bradyrhizobium sp. BTAi1
BBta_5466 ABQ37429 hypothetical protein BBta... BLink CDD UniProt Pfam InterPro
BBta_7866 ABQ39691 hypothetical protein BBta... BLink CDD UniProt Pfam InterPro
*BBta_1511 ABQ33730 hypothetical protein BBta... BLink CDD UniProt Pfam InterPro
*BBta_1512 ABQ33731 metal dependent phosphohy... BLink CDD UniProt Pfam InterPro
Bradyrhizobium sp. ORS278
BRADO4997 CAL78696 hypothetical protein BRAD... BLink CDD UniProt Pfam InterPro
BRADO7135 CAL80717 hypothetical protein BRAD... BLink CDD UniProt Pfam InterPro
Bradyrhizobium sp. S23321
S23_56880 BAL78880 two-component response re... BLink CDD UniProt Pfam InterPro
S23_40710 BAL77266 hypothetical protein S23_... BLink CDD UniProt Pfam InterPro
S23_69420 BAL80117 hypothetical protein S23_... BLink CDD UniProt Pfam InterPro
Gluconobacter oxydans 621H
GOX2505 AAW59571 Response regulator [Gluco... BLink CDD UniProt Pfam InterPro
Magnetococcus marinus MC-1
Mmc1_0199 ABK42726 metal dependent phosphohy... BLink CDD UniProt Pfam InterPro
Mmc1_0279 ABK42806 metal dependent phosphohy... BLink CDD UniProt Pfam InterPro
Mmc1_1538 ABK44047 metal dependent phosphohy... BLink CDD UniProt Pfam InterPro
Mmc1_1640 ABK44149 metal dependent phosphohy... BLink CDD UniProt Pfam InterPro
Mmc1_1813 ABK44321 response regulator receiv... BLink CDD UniProt Pfam InterPro
Mmc1_1857 ABK44365 metal dependent phosphohy... BLink CDD UniProt Pfam InterPro
Mmc1_2262 ABK44763 metal dependent phosphohy... BLink CDD UniProt Pfam InterPro
Mmc1_2455 ABK44955 response regulator receiv... BLink CDD UniProt Pfam InterPro
Mmc1_2526 ABK45026 metal dependent phosphohy... BLink CDD UniProt Pfam InterPro
Mmc1_2944 ABK45435 metal dependent phosphohy... BLink CDD UniProt Pfam InterPro
Mmc1_2945 ABK45436 response regulator receiv... BLink CDD UniProt Pfam InterPro
Mmc1_3072 ABK45563 response regulator receiv... BLink CDD UniProt Pfam InterPro
Mmc1_3124 ABK45614 metal dependent phosphohy... BLink CDD UniProt Pfam InterPro
Mmc1_3165 ABK45655 response regulator receiv... BLink CDD UniProt Pfam InterPro
Mmc1_3408 ABK45894 response regulator receiv... BLink CDD UniProt Pfam InterPro
Mmc1_3529 ABK46014 metal dependent phosphohy... BLink CDD UniProt Pfam InterPro
Magnetospirillum magneticum AMB-1
amb0233 BAE49037 HD-GYP domain [Magnetospi... BLink CDD UniProt Pfam InterPro
amb0553 BAE49357 Response regulator [Magne... BLink CDD UniProt Pfam InterPro
amb0652 BAE49456 Response regulator [Magne... BLink CDD UniProt Pfam InterPro
amb0845 BAE49649 Response regulator [Magne... BLink CDD UniProt Pfam InterPro
amb1048 BAE49852 Response regulator [Magne... BLink CDD UniProt Pfam InterPro
amb1211 BAE50015 Response regulator [Magne... BLink CDD UniProt Pfam InterPro
amb1839 BAE50643 Response regulator contai... BLink CDD UniProt Pfam InterPro
amb1840 BAE50644 Response regulator contai... BLink CDD UniProt Pfam InterPro
amb2500 BAE51304 HD-GYP domain [Magnetospi... BLink CDD UniProt Pfam InterPro
amb2956 BAE51760 Response regulator contai... BLink CDD UniProt Pfam InterPro
amb3282 BAE52086 Response regulator contai... BLink CDD UniProt Pfam InterPro
amb3439 BAE52243 Response regulator contai... BLink CDD UniProt Pfam InterPro
amb3440 BAE52244 Response regulator contai... BLink CDD UniProt Pfam InterPro
amb3625 BAE52429 Methyl-accepting chemotax... BLink CDD UniProt Pfam InterPro
amb4144 BAE52948 Response regulator contai... BLink CDD UniProt Pfam InterPro
amb4227 BAE53031 HD-GYP domain [Magnetospi... BLink CDD UniProt Pfam InterPro
Mesorhizobium australicum WSM2073
Mesau_02487 AGB44910 HD-GYP domain-containin... BLink CDD UniProt Pfam InterPro
Mesorhizobium loti MAFF303099
mll1989 BAB49228 hypothetical protein mll1... BLink CDD UniProt Pfam InterPro
Mesorhizobium opportunistum WSM2075
Mesop_1970 AEH86451 LuxR family transcriptio... BLink CDD UniProt Pfam InterPro
Methylobacterium chloromethanicum CM4
Mchl_0150 ACK81097 response regulator receiv... BLink CDD UniProt Pfam InterPro
Mchl_1412 ACK82292 metal dependent phosphohy... BLink CDD UniProt Pfam InterPro
Mchl_4913 ACK85678 response regulator receiv... BLink CDD UniProt Pfam InterPro
Mchl_3816 ACK84634 response regulator receiv... BLink CDD UniProt Pfam InterPro
Mchl_0538 ACK81470 response regulator receiv... BLink CDD UniProt Pfam InterPro
Mchl_4291 ACK85067 metal dependent phosphohy... BLink CDD UniProt Pfam InterPro
Mchl_3949 ACK84760 metal dependent phosphohy... BLink CDD UniProt Pfam InterPro
Methylobacterium extorquens PA1
Mext_0206 ABY28632 metal-dependent phosphohy... BLink CDD UniProt Pfam InterPro
Mext_1251 ABY29653 metal-dependent phosphohy... BLink CDD UniProt Pfam InterPro
Mext_4449 ABY32817 metal-dependent phosphohy... BLink CDD UniProt Pfam InterPro
Mext_3509 ABY31894 metal-dependent phosphohy... BLink CDD UniProt Pfam InterPro
Mext_3923 ABY32294 metal dependent phophohyd... BLink CDD UniProt Pfam InterPro
Mext_3656 ABY32034 metal dependent phophohyd... BLink CDD UniProt Pfam InterPro
*Mext_0801 ABY29206 HD-GYP domain-containing ... BLink CDD UniProt Pfam InterPro
Methylobacterium nodulans ORS 2060
Mnod_1329 ACL56329 metal dependent phosphohy... BLink CDD UniProt Pfam InterPro
Mnod_5340 ACL60185 response regulator receiv... BLink CDD UniProt Pfam InterPro
Mnod_7465 ACL62202 metal dependent phosphohy... BLink CDD UniProt Pfam InterPro
Methylobacterium populi BJ001
Mpop_3894 ACB82021 response regulator receiv... BLink CDD UniProt Pfam InterPro
Mpop_3942 ACB82069 metal dependent phosphohy... BLink CDD UniProt Pfam InterPro
Mpop_4396 ACB82497 metal dependent phosphohy... BLink CDD UniProt Pfam InterPro
Mpop_4963 ACB83059 response regulator receiv... BLink CDD UniProt Pfam InterPro
Methylobacterium radiotolerans JCM 2831
Mrad2831_0366 ACB22389 response regulator re... BLink CDD UniProt Pfam InterPro
Mrad2831_1613 ACB23608 response regulator re... BLink CDD UniProt Pfam InterPro
Mrad2831_2085 ACB24080 response regulator re... BLink CDD UniProt Pfam InterPro
Mrad2831_2795 ACB24779 metal dependent phosp... BLink CDD UniProt Pfam InterPro
Mrad2831_2876 ACB24860 metal dependent phosp... BLink CDD UniProt Pfam InterPro
Mrad2831_5693 ACB27638 metal dependent phosp... BLink CDD UniProt Pfam InterPro
Methylobacterium sp. 4-46
M446_0838 ACA15392 response regulator receiv... BLink CDD UniProt Pfam InterPro
M446_5034 ACA19361 response regulator receiv... BLink CDD UniProt Pfam InterPro
M446_5359 ACA19677 response regulator receiv... BLink CDD UniProt Pfam InterPro
M446_6715 ACA20965 metal dependent phosphohy... BLink CDD UniProt Pfam InterPro
M446_0917 ACA15466 metal dependent phosphohy... BLink CDD UniProt Pfam InterPro
Micavibrio aeruginosavorus ARL-13
MICA_1527 AEP09845 HD domain-containing prot... BLink CDD UniProt Pfam InterPro
Nitrobacter hamburgensis X14
Nham_4035 ABE64701 response regulator receiv... BLink CDD UniProt Pfam InterPro
Nitrobacter winogradskyi Nb-255
Nwi_3139 ABA06386 Metal-dependent phosphohy... BLink CDD UniProt Pfam InterPro
Novosphingobium aromaticivorans DSM 12444
Saro_0845 ABD25290 metal dependent phosphohy... BLink CDD UniProt Pfam InterPro
Novosphingobium sp. PP1Y
PP1Y_AT9714 CCA91909 metal dependent phospho... BLink CDD UniProt Pfam InterPro
Oligotropha carboxidovorans OM5
OCAR_7191 ACI94295 response regulator receiv... BLink CDD UniProt Pfam InterPro
Pelagibacterium halotolerans B2
KKY_2148 AEQ52157 unnamed protein product [... BLink CDD UniProt Pfam InterPro
KKY_2987 AEQ52981 unnamed protein product [... BLink CDD UniProt Pfam InterPro
KKY_3671 AEQ53653 unnamed protein product [... BLink CDD UniProt Pfam InterPro
Polymorphum gilvum SL003B-26A1
*SL003B_3537 ADZ71959 unnamed protein product... BLink CDD UniProt Pfam InterPro
Rhizobium etli CFN 42
RHE_CH03091 ABC91857 putative phosphohydrolas... BLink CDD UniProt Pfam InterPro
Rhizobium leguminosarum bv. viciae 3841
RL3539 CAK09027 putative sensory box HD d... BLink CDD UniProt Pfam InterPro
RL3611 CAK09100 putative two-component re... BLink CDD UniProt Pfam InterPro
pRL120258 CAK11970 putative HD domain transc... BLink CDD UniProt Pfam InterPro
Rhodopseudomonas palustris CGA009
RPA0145 CAE25589 Metal dependent phosphohy... BLink CDD UniProt Pfam InterPro
RPA4830 CAE30270 Metal dependent phosphohy... BLink CDD UniProt Pfam InterPro
Rhodospirillum photometricum DSM 122
RSPPHO_00735 CCG07361 Response regulator con... BLink CDD UniProt Pfam InterPro
RSPPHO_00775 CCG07401 HD-GYP domain [Rhodosp... BLink CDD UniProt Pfam InterPro
RSPPHO_01316 CCG07942 HD-GYP domain [Rhodosp... BLink CDD UniProt Pfam InterPro
RSPPHO_01650 CCG08276 Response regulator con... BLink CDD UniProt Pfam InterPro
RSPPHO_02748 CCG09374 Methyl-accepting chemo... BLink CDD UniProt Pfam InterPro
RSPPHO_02822 CCG09448 Response regulator rec... BLink CDD UniProt Pfam InterPro
*RSPPHO_01734 CCG08360 Response regulator con... BLink CDD UniProt Pfam InterPro
Rhodospirillum centenum SW
RC1_0301 ACI97750 response regulator R PFG ... BLink CDD UniProt Pfam InterPro
RC1_4055 ACJ01394 response regulator receiv... BLink CDD UniProt Pfam InterPro
Rhodospirillum rubrum ATCC 11170
Rru_A3180 ABC23975 Metal dependent phosphohy... BLink CDD UniProt Pfam InterPro
Rru_A0692 ABC21496 Response regulator receiv... BLink CDD UniProt Pfam InterPro
Sphingobium chlorophenolicum L-1
Sphch_2941 AEG50573 unnamed protein product ... BLink CDD UniProt Pfam InterPro
Sphingobium sp. SYK-6
SLG_24330 BAK67108 unnamed protein product [... BLink CDD UniProt Pfam InterPro
SLG_10500 BAK65725 unnamed protein product [... BLink CDD UniProt Pfam InterPro
Sphingomonas wittichii RW1
Swit_5388 ABQ71496 metal dependent phosphohy... BLink CDD UniProt Pfam InterPro
Tistrella mobilis KA081020-065
TMO_1904 AFK53743 multi-sensor signal trans... BLink CDD UniProt Pfam InterPro
TMO_1905 AFK53744 putative PAS/PAC sensor p... BLink CDD UniProt Pfam InterPro
TMO_b0029 AFK56037 two component system, tra... BLink CDD UniProt Pfam InterPro
Please send your corrections, questions and comments to Michael Galperin