Census of bacterial signal transduction proteins

Signal transduction proteins encoded in genomes of 330 bacterial and archaeal species^a

This is an updated web supplement to the paper "A census of membrane-bound and intracellular signal transduction proteins in bacteria:
Bacterial IQ, extroverts and introverts" by M. Y. Galperin, published in BMC Microbiology 2005, 5:35. Abstract. Full text (PDF).
(The original web supplement to that paper, covering genomes of 167 species, can be found here).

An earlier version of this table, prepared for the review "Bacterial signal transduction network in a genomic perspective"
by M.Y. Galperin, published in Environ. Microbiol. 2004, 6, 552-567. Abstract. Full text (PDF) .

The first variant of this table, prepared for the review "Novel domains of the prokaryotic two-component signal transduction system",
by M.Y. Galperin, A.N. Nikolskaya and E.V. Koonin, published in FEMS Microbiol. Lett. 2001, 203, 11-21. Abstract. Full text (PDF).

Please send your corrections, questions and comments to Michael Galperin.

Bacteria	Phylo	GenBank entry	All prot.	HisK	MCP	STYK	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	All	RRs	All total	IQ
Acidobacteria bacterium Ellin345	Acido	CP000360	4777	67	3	31	6	-	2	10	-	4	1	124	107	225	131
Solibacter usitatus Ellin6076	Acido	CP000473	7826	110	4	84	3	-	1	1	-	3	1	207	106	311	88
Actinobacteria	Phylo	GenBank	All	HisK	MCP	STYK	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	All	RRs	Total	IQ
Acidothermus cellulolyticus	Actino	CP000481	2157	16	5	6	6	7	3	1	-	-	-	44	27	69	164
Arthrobacter aurescens	Actino	CP000474	4587	24	-	8	3	3	2	-	-	1	-	41	22	62	72
Arthrobacter sp. FB24	Actino	CP000454	4506	29	-	10	1	4	4	-	-	1	-	49	30	79	85
Bifidobacterium adolescentis	Actino	AP009256	1631	12	-	6	-	-	-	-	-	-	-	18	14	32	124
Bifidobacterium longum NCC2705	Actino	AE014295	1727	9	-	7	-	-	-	-	-	-	-	16	10	26	101
Corynebacterium diphtheriae NCTC 13129	Actino	BX248353	2272	11	-	4	-	-	-	-	-	1	-	16	11	27	94
Corynebacterium efficiens YS-314	Actino	BA000035	2950	13	-	4	-	-	-	-	-	1	-	18	13	31	81
Corynebacterium glutamicum ATCC 13032	Actino	BA000036	2993	13	-	4	-	1	-	-	-	1	-	19	14	33	80
Corynebacterium jeikeium K411	Actino	CR931997	2137	9	-	5	-	-	-	-	-	1	-	15	9	24	89
Frankia alni ACN14a	Actino	CT573213	6711	45	-	59	9	7	6	1	-	2	1	130	49	179	88
Frankia sp. CcI3	Actino	CP000249	4499	32	-	35	6	6	4	-	-	3	-	86	32	118	98
Leifsonia xyli subsp. xyli str. CTCB07	Actino	AE016822	2030	16	-	6	-	-	-	-	-	-	-	22	21	43	119
Mycobacterium avium subsp. paratuberculosis str. k10	Actino	AE016958	4350	19	-	12	2	2	1	1	-	12	-	49	18	67	82
Mycobacterium bovis AF2122/97	Actino	BX248333	3920	13*	-	13	-	1	1	-	-	16	-	44	12	56	82
Mycobacterium leprae TN	Actino	AL450380	1605	5	-	6	2	1	1	-	-	4	-	19	5	24	67
Mycobacterium smegmatis str. MC2 155	Actino	CP000480	6716	34	-	15	-	1	-	-	-	8	-	58	35	93	67
Mycobacterium sp. KMS	Actino	CP000518	5975	29	-	19	5	5	-	1	-	15	-	74	32	106	80
Mycobacterium sp. MCS	Actino	CP000384	5615	26	-	16	6	4	-	1	-	13	-	66	29	95	80
Mycobacterium tuberculosis H37Rv	Actino	AL123456	3927	13	-	13	-	1	1	-	-	16	-	44	13	57	82
Mycobacterium ulcerans Agy99	Actino	CP000325	4160	12	-	14	-	-	-	-	-	15	-	41	16	57	64
Mycobacterium vanbaalenii PYR-1	Actino	CP000511	5979	37	-	13	10	4	1	1	-	10	-	76	37	113	80
Nocardia farcinica IFM 10152	Actino	AP006618	5936	37	-	25	6	2	-	-	-	4	-	74	33	107	80
Nocardioides sp. JS614	Actino	CP000509	4909	53	5	13	1	2	-	2	-	2	-	78	46	124	103
Propionibacterium acnes KPA171202	Actino	AE017283	2297	12	-	4	-	-	-	-	-	-	-	16	13	29	96
Rhodococcus sp. RHA1	Actino	CP000431	9145	46	-	43	4	3	-	1	-	7	-	104	41	145	61
Rubrobacter xylanophilus DSM 9941	Actino	CP000386	3140	20	-	9	1	5	1	3	-	-	-	39	20	59	114
Streptomyces avermitilis MA-4680	Actino	BA000030	7671	78	-	35	3	4	1	1	-	1	-	123	70	193	75
Streptomyces coelicolor A3(2)	Actino	AL645882	8154	95*	-	37	3*	4	-	1	-	1	-	141	84	225	82
Thermobifida fusca YX	Actino	CP000088	3110	28	-	25	1	2	1	2	-	1	-	60	28	88	125
Tropheryma whipplei TW08/27	Actino	BX072543	783	2	-	4	-	-	-	-	-	-	-	6	2	8	93
Bacteroidetes	Phylo	GenBank	All	HisK	MCP	STYK	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	All	RRs	Total	IQ
Bacteroides fragilis YCH46	Bacte	AP006841	4625	60	-	-	-	-	-	-	-	-	-	60	29	88	86
Bacteroides thetaiotaomicron VPI-5482	Bacte	AE015928	4816	85	-	2	-	-	-	-	-	-	-	87	27	113	83
Cytophaga hutchinsonii ATCC 33406	Bacte	CP000383	3785	57	-	2	-	-	-	-	-	-	-	59	35	93	106
Gramella forsetii	Bacte	CU207366	3584	31	-	2	-	-	-	-	-	2	-	35	34	69	105
Porphyromonas gingivalis W83	Bacte	AE015924	1909	6	-	-	-	-	-	-	-	-	-	6	6	12	56
Salinibacter ruber DSM 13855	Bacte	CP000159	2833	51	13	4	-	1	-	-	-	-	-	69	26	95	132
Chlamydiae	Phylo	GenBank	All	HisK	MCP	STYK	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	All	RRs	Total	IQ
Chlamydia muridarum Nigg	Chlam	AE002160	904	1	-	3	-	-	-	-	-	-	-	4	2	6	46
Chlamydia trachomatis D/UW-3/CX	Chlam	AE001273	895	1	-	3	-	-	-	-	-	-	-	4	2	6	48
Chlamydophila abortus S26/3	Chlam	CR848038	932	1	-	3	-	-	-	-	-	-	-	4	2	6	44
Chlamydophila caviae GPIC	Chlam	AE015925	1005	1	-	3	-	-	-	-	-	-	-	4	2	6	42
Chlamydophila felis Fe/C-56	Chlam	AP006861	1013	1	-	3	-	-	-	-	-	-	-	4	2	6	43
Chlamydophila pneumoniae CWL029	Chlam	AE001363	1054	1	-	3	-	-	-	-	-	-	-	4	2	6	41
Protochlamydia amoebophila UWE25	Chlam	BX908798	2031	2	-	4	-	-	-	-	-	-	-	6	2	8	36
Chlorobi	Phylo	GenBank	All	HisK	MCP	STYK	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	All	RRs	Total	IQ
Chlorobium chlorochromatii CaD3	Chloro	CP000108	2002	4	-	1	1	-	-	-	-	-	-	6	3	9	39
Chlorobium phaeobacteroides DSM 266	Chloro	CP000492	2650	13	-	-	1	-	-	-	-	1	-	15	5	20	62
Chlorobium tepidum TLS	Chloro	AE006470	2252	8	-	-	1	-	-	-	-	1	-	10	4	14	70
Pelodictyon luteolum DSM 273	Chloro	CP000096	2083	19	-	-	-	-	-	-	-	-	-	19	15	34	114
Cyanobacteria	Phylo	GenBank	All	HisK	MCP	STYK	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	All	RRs	Total	IQ
Anabaena variabilis ATCC 29413	Cyano	CP000117	5657	129	3	59	8	6	1	2	-	5	-	213	90	281	130
Gloeobacter violaceus PCC 7421	Cyano	BA000045	4430	46	-	19	-	-	-	1	-	1	1	68	39	106	108
Nostoc sp. PCC 7120	Cyano	BA000019	6055	134	3	52	8	6	1	2	-	6	-	212	96	286	116
Prochlorococcus marinus CCMP1375	Cyano	AE017126	1882	5	-	3	-	-	-	-	-	-	-	8	6	14	86
Synechococcus elongatus PCC 6301	Cyano	AP008231	2525	15	2	8	9	8	1	2	-	2	-	47	19	64	142
Synechococcus sp. CC9605	Cyano	CP000110	2645	6	-	4	-	-	-	-	-	1	-	11	9	20	77
Synechococcus sp. CC9902	Cyano	CP000097	2307	7	-	4	-	-	-	-	-	-	-	11	7	18	81
Synechococcus sp. JA-3-3Ab	Cyano	CP000239	2760	22	2	13	2	-	1	2	-	1	-	43	31	70	137
Synechococcus sp. WH 8102	Cyano	BX548020	2517	6	-	3	-	-	-	-	-	-	-	9	9	18	74
Synechocystis sp. PCC 6803	Cyano	BA000022	3567	46	4	12	13	9	4	2	-	3	-	93	47	128	140
Thermosynechococcus elongatus BP-1	Cyano	BA000039	2475	19	3	17	4	5	-	1	-	2	-	51	26	73	159
Trichodesmium erythraeum IMS101	Cyano	CP000393	5124	35	3	48	1	3	-	2	-	13	-	105	31	131	72
Deinococcus-Thermus	Phylo	GenBank	All	HisK	MCP	STYK	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	All	RRs	Total	IQ
Deinococcus geothermalis DSM 11300	Deino	CP000359	2857	28	-	5	9	-	-	5	-	1	-	48	31	78	140
Deinococcus radiodurans R1	Deino	AE000513	3184	21	3	9	12	4	1	4	-	-	-	54	26	78	130
Thermus thermophilus HB27	Deino	AE017221	2210	11	-	4	5	1	-	5	-	1	-	27	14	40	139
Alpha-Proteobacteria	Phylo	GenBank	All	HisK	MCP	STYK	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	All	RRs	Total	IQ
Agrobacterium tumefaciens str. C58	Alpha	AE008688	5402	53	20	2	14	13	1	1	-	3	-	107	58	162	110
Anaplasma marginale str. St. Maries	Alpha	CP000030	949	3	-	1	1	-	-	-	-	-	-	5	3	7	59
Anaplasma phagocytophilum HZ	Alpha	CP000235	1264	3	-	1	1	-	-	-	-	-	-	5	3	7	48
Bartonella henselae str. Houston-1	Alpha	BX897699	1488	11	-	1	-	1	-	-	-	-	-	13	11	24	113
Bartonella quintana str. Toulouse	Alpha	BX897700	1142	11	-	1	-	1	-	-	-	-	-	13	11	24	138
Bradyrhizobium japonicum USDA 110	Alpha	BA000040	8317	92	35	4	12	23	4	3	-	35	-	208	96	298	94
Brucella abortus biovar 1 str. 9-941	Alpha	AE017223	3085	20	-	2	2	2	2	-	-	-	-	28	22	49	101
Brucella melitensis 16M	Alpha	AE008917	3198	22	-	2	6	3	2	-	-	-	-	35	22	56	109
Brucella suis 1330	Alpha	AE014291	3271	21	-	2	5	3	2	-	-	-	-	33	22	54	105
Caulobacter crescentus CB15	Alpha	AE005673	3737	62	18	2	4	7	3	-	-	3	-	99	45	142	146
Ehrlichia canis str. Jake	Alpha	CP000107	925	3	-	1	1	-	-	-	-	-	-	5	3	7	54
Ehrlichia chaffeensis str. Arkansas	Alpha	CP000236	1105	3	-	1	1	-	-	-	-	-	-	5	3	7	60
Ehrlichia ruminantium str. Welgevonden	Alpha	CR767821	888	3	-	1	2	-	-	-	-	-	-	6	3	8	57
Erythrobacter litoralis HTCC2594	Alpha	CP000157	3011	23	2	5	3	7	1	-	-	-	-	41	23	64	126
Gluconobacter oxydans 621H	Alpha	CP000009	2664	16	3	2	2	4	1	1	-	1	-	30	21	49	113
Granulibacter bethesdensis CGDNIH1	Alpha	CP000394	2437	19	-	1	-	-	-	-	-	1	-	21	20	41	111
Hyphomonas neptunium ATCC 15444	Alpha	CP000158	3505	28	-	8	10	9	2	-	-	-	-	57	27	82	118
Jannaschia sp. CCS1	Alpha	CP000264	4283	22	4	5	2	8	2	-	-	2	-	45	26	70	92
Magnetospirillum magneticum AMB-1	Alpha	AP007255	4559	104	65	10	29	17	10	16	-	7	-	258	100	339	184
Maricaulis maris MCS10	Alpha	CP000449	3063	36	8	1	7	5	3	-	-	1	-	61	40	98	143
Mesorhizobium loti MAFF303099	Alpha	BA000012	7275	62	1	3	16	16	2	1	-	12	-	113	59	168	91
Mesorhizobium sp. BNC1	Alpha	CP000390	4543	32	1	2	4	7	1	-	-	-	-	47	35	81	88
Neorickettsia sennetsu str. Miyayama	Alpha	CP000237	932	3	-	1	1	-	1	-	-	-	-	6	2	7	82
Nitrobacter hamburgensis X14	Alpha	CP000319	4326	41	4	2	6	5	3	1	-	1	-	63	41	99	97
Nitrobacter winogradskyi Nb-255	Alpha	CP000115	3122	26	2	2	4	4	2	1	-	2	-	43	29	69	118
Novosphingobium aromaticivorans DSM 12444	Alpha	CP000248	3324	33	4	2	1	7	1	1	-	1	-	50	33	83	124
Paracoccus denitrificans PD1222	Alpha	CP000489	5077	34	-	2	-	-	2	-	-	1	-	39	40	77	81
Pelagibacter ubique HTCC1062	Alpha	CP000084	1354	5	-	1	-	-	-	-	-	-	-	6	5	11	94
Rhizobium etli CFN 42	Alpha	CP000133	5963	55	25	3	14	21	-	1	-	22	-	141	68	205	108
Rhizobium leguminosarum bv. viciae 3841	Alpha	AM236086	7150	61	28	3	16	22	-	3	-	29	-	162	70	227	96
Rhodobacter sphaeroides 2.4.1	Alpha	CP000143	4126	45	11	6	9	7	-	-	-	-	-	78	52	128	125
Rhodopseudomonas palustris CGA009	Alpha	BX571963	4813	66	29	5	22	14	4	2	-	7	-	149	54	197	127
Rhodospirillum rubrum ATCC 11170	Alpha	CP000230	3841	55	50	4	21	15	4	2	-	1	-	152	57	200	158
Rickettsia bellii RML369-C	Alpha	CP000087	1429	5	-	1	1	-	1	-	-	-	-	8	4	11	80
Rickettsia conorii str. Malish 7	Alpha	AE006914	1374	5	-	1	1	-	1	-	-	-	-	8	4	11	96
Rickettsia felis URRWXCal2	Alpha	CP000053	1532	5	-	1	1	-	1	-	-	-	-	8	4	11	77
Rickettsia prowazekii str. Madrid E	Alpha	AJ235269	835	4	-	1	1	-	1	-	-	-	-	7	4	10	101
Rickettsia typhi str. Wilmington	Alpha	AE017197	838	4	-	1	1	-	1	-	-	-	-	7	4	10	101
Roseobacter denitrificans OCh 114	Alpha	CP000362	4129	25	6	2	2	6	1	-	-	3	-	45	31	75	97
Silicibacter pomeroyi DSS-3	Alpha	CP000031	4252	23	-	2	4	1	1	-	-	11	-	42	26	67	86
Silicibacter sp. TM1040	Alpha	CP000377	3824	40	19	2	5	6	2	-	-	7	-	81	35	114	126
Sinorhizobium meliloti 1021	Alpha	AL591688	6205	48	9	2	6	11	2	-	-	28	-	106	57	162	94
Sphingopyxis alaskensis RB2256	Alpha	CP000356	3195	19	3	1	6	6	1	-	-	1	-	37	25	62	112
Wolbachia endosymbiont of Brugia malayi	Alpha	AE017321	805	2	-	1	1	-	-	-	-	-	-	4	2	5	-
Wolbachia endosymbiont of Drosophila	Alpha	AE017196	1195	2	-	1	1	-	-	-	-	-	-	4	2	5	-
Zymomonas mobilis subsp. mobilis ZM4	Alpha	AE008692	1998	15	3	1	2	2	1	-	-	-	-	24	13	37	137
Beta-Proteobacteria	Phylo	GenBank	All	HisK	MCP	STYK	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	All	RRs	Total	IQ
Azoarcus sp. BH72	Beta	AM406670	3989	63	24	13	23	24	4	8	-	3	-	162	72	222	168
Azoarcus sp. EbN1	Beta	CR555306	4609	41	2	7	7	19	4	5	-	1	-	86	47	128	117
Bordetella bronchiseptica RB50	Beta	BX470250	4994	25	8	4	10	5	4	2	-	-	-	58	33	90	86
Bordetella parapertussis 12822	Beta	BX470249	4185	22	6	4	8	5	4	2	-	-	-	51	29	79	90
Bordetella pertussis Tohama I	Beta	BX470248	3436	18	5	3	5	2	1	1	-	-	-	35	22	57	88
Burkholderia cenocepacia AU 1054	Beta	CP000458	6477	50	21	4	13	5	6	2	-	-	1	102	67	166	87
Burkholderia cepacia AMMD	Beta	CP000440	6617	50	18	5	13	7	7	1	-	2	1	104	62	162	83
Burkholderia mallei ATCC 23344	Beta	CP000011	4764	36	17	3	4	4	4	2	-	-	-	70	38	105	86
Burkholderia pseudomallei K96243	Beta	BX571965	5728	45	21	4	5	5	6	2	-	-	1	89	38	125	76
Burkholderia sp. 383	Beta	CP000150	7717	62	18	4	14	7	7	1	-	3	1	117	76	190	78
Burkholderia thailandensis E264	Beta	CP000086	5634	46	20	4	6	4	4	2	-	1	1	88	59	144	88
Burkholderia xenovorans LB400	Beta	CP000271	8702	46	33	6	15	17	12	-	-	-	1	130	67	195	71
Chromobacterium violaceum ATCC 12472	Beta	AE016825	4407	50	42	4	27	16	10	11	-	-	-	160	65	211	151
Dechloromonas aromatica RCB	Beta	CP000089	4171	103	25	9	29	28	3	15	-	3	-	215	98	292	188
Methylobacillus flagellatus KT	Beta	CP000284	2753	27	7	5	9	13	5	2	-	2	-	70	40	107	170
Neisseria gonorrhoeae FA 1090	Beta	AE004969	2002	4	-	1	-	-	-	-	-	-	-	5	2	7	33
Neisseria meningitidis MC58	Beta	AE002098	2079	5	-	1	-	-	-	-	-	-	-	6	5	11	54
Nitrosomonas europaea ATCC 19718	Beta	AL954747	2461	15	3	2	2	4	5	-	-	3	-	34	19	50	119
Nitrosomonas eutropha C91	Beta	CP000450	2551	15	3	2	3	4	3	1	-	2	-	33	18	49	119
Nitrosospira multiformis ATCC 25196	Beta	CP000103	2805	24	1	2	6	11	3	1	-	-	-	48	28	70	125
Polaromonas sp. JS666	Beta	CP000316	5453	49	4	7	3	3	1	-	-	4	-	71	62	130	95
Ralstonia eutropha JMP134	Beta	CP000090	6446	59	23	3	17	11	2	3	-	7	1	126	69	191	94
Ralstonia metallidurans CH34	Beta	CP000352	6319	53	16	3	18	13	10	2	-	-	1	116	87	200	101
Ralstonia solanacearum GMI1000	Beta	AL646052	5116	44	22	3	12	10	4	2	-	-	1	98	64	160	107
Rhodoferax ferrireducens T118	Beta	CP000267	4418	63	24	7	25	30	-	14	-	-	-	163	78	232	152
Thiobacillus denitrificans ATCC 25259	Beta	CP000116	2827	31	7	6	15	16	4	2	-	2	-	83	38	115	180
Gamma-Proteobacteria	Phylo	GenBank	All	HisK	MCP	STYK	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	All	RRs	Total	IQ
Acinetobacter sp. ADP1	Gamma	CR543861	3325	18	-	6	7	3	1	-	-	1	-	36	18	54	97
Aeromonas hydrophila subsp. hydrophila ATCC 7966	Gamma	CP000462	4122	46	43	4	32	13	10	14	1	-	1	164	57	212	152
Alcanivorax borkumensis SK2	Gamma	AM286690	2755	30	1	6	9	3	-	1	-	2	-	52	31	81	140
Alkalilimnicola ehrlichei MLHE-1	Gamma	CP000453	2865	25	5	3	23	18	3	1	-	-	-	78	36	110	156
Baumannia cicadellinicola str. Hc	Gamma	CP000238	595	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Blochmannia floridanus	Gamma	BX248583	583	-	-	1	-	-	-	-	-	-	-	1	-	1	-
Blochmannia pennsylvanicus str. BPEN	Gamma	CP000016	610	-	-	1	-	-	-	-	-	-	-	1	-	1	-
Buchnera aphidicola str. APS	Gamma	BA000003	574	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Candidatus Carsonella ruddii PV	Gamma	AP009180	182	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	Gamma	CP000488	976	2	-	2	-	-	-	-	-	-	-	4	3	7	61
Chromohalobacter salexigens DSM 3043	Gamma	CP000285	3298	21	13	3	11	9	2	2	-	-	-	61	29	90	125
Colwellia psychrerythraea 34H	Gamma	CP000083	4910	56	23	9	34	26	5	3	-	-	-	156	67	215	135
Coxiella burnetii RSA 493	Gamma	AE016828	2046	7	-	4	-	-	-	-	-	1	-	12	8	20	95
Erwinia carotovora subsp. atroseptica SCRI1043	Gamma	BX950851	4472	28	36	2	13	4	7	1	1	-	1	93	28	121	106
Escherichia coli K12	Gamma	U00096	4242	30	5	2	12	7	10	-	1	-	-	67	32	99	104
Escherichia coli O157:H7	Gamma	BA000007	5253	30	5	3	12	7	9	-	1	-	-	67	33	100	89
Francisella tularensis subsp. tularensis	Gamma	AJ749949	1804	2	-	1	-	-	-	-	-	-	-	3	2	5	-
Haemophilus ducreyi 35000HP	Gamma	AE017143	1717	1	-	1	-	-	-	-	1	-	-	3	3	6	29
Haemophilus influenzae Rd KW20	Gamma	L42023	1711	4	-	1	-	-	-	-	1	-	-	6	6	12	72
Haemophilus somnus 129PT	Gamma	CP000436	1798	1	-	2	-	-	-	-	1	-	-	4	3	7	35
Hahella chejuensis KCTC 2396	Gamma	CP000155	6778	80	35	20	31	33	6	9	1	4	1	220	107	308	121
Idiomarina loihiensis L2TR	Gamma	AE017340	2640	26	15	2	16	17	3	1	-	-	-	80	31	108	179
Legionella pneumophila subsp. pneumophila str. Philadelphia 1	Gamma	AE017354	2942	12	-	5	8	11	3	-	-	5	-	44	13	56	105
Mannheimia succiniciproducens MBEL55E	Gamma	AE016827	2384	5	-	1	-	-	-	-	1	-	-	7	5	12	57
Methylococcus capsulatus str. Bath	Gamma	AE017282	2959	17	2	3	5	11	1	1	-	-	-	40	22	60	112
Nitrosococcus oceani ATCC 19707	Gamma	CP000127	3017	19	1	1	2	12	-	1	-	1	-	37	26	60	107
Pasteurella multocida subsp. multocida str. Pm70	Gamma	AE004439	2015	9	-	1	-	-	-	-	1	-	-	11	9	20	86
Photobacterium profundum SS9	Gamma	CR354531	5480	53	39	8	22	10	6	2	1	-	1	142	59	196	108
Photorhabdus luminescens TTO1	Gamma	BX470251	4683	18	2	1	-	-	-	-	1	-	-	22	20	42	53
Pseudoalteromonas atlantica T6c	Gamma	CP000388	4281	55	10	6	33	27	3	5	-	2	-	141	60	190	131
Pseudoalteromonas haloplanktis TAC125	Gamma	CR954246	3486	38	14	4	21	17	7	3	-	-	-	104	46	143	153
Pseudomonas aeruginosa PAO1	Gamma	AE004091	5567	63	26	8	17	16	5	3	1	1	-	140	73	206	113
Pseudomonas entomophila L48	Gamma	CT573326	5134	61	32	4	19	19	2	-	1	-	-	138	70	204	120
Pseudomonas fluorescens Pf-5	Gamma	CP000076	6137	80	42		21	19	10	4	1	-	-	177	92	257	112
Pseudomonas putida KT2440	Gamma	AE015451	5350	67	27	5	19	17	3	2	1	-	-	141	75	210	116
Pseudomonas syringae pv. tomato str. DC3000	Gamma	AE016853	5608	69	48	8	16	19	2	1	1	-	-	164	71	229	114
Psychrobacter arcticus 273-4	Gamma	CP000082	2120	13	1	3	-	1	-	-	-	-	-	18	14	32	98
Psychrobacter cryohalolentis K5	Gamma	CP000323	2511	18	1	5	3	2	-	-	-	1	-	30	16	46	103
Psychromonas ingrahamii	Gamma	CP000510	3541	24	-	7	23	32	5	5	1	-	-	97	28	120	118
Saccharophagus degradans	Gamma	CP000282	4008	61	13	11	25	18	2	9	1	3	-	143	68	199	138
Salmonella enterica subsp. enterica serovar Paratypi A	Gamma	CP000026	4093	26	6	1	6	7	8	-	1	-	-	55	33	88	99
Salmonella enterica subsp. enterica serovar Typhi str. CT18	Gamma	AL513382	4758	30	6	3	5	7	9	-	1	-	-	61	32	93	95
Salmonella typhimurium LT2	Gamma	AE006468	4527	32	9	1	5	7	8	-	1	-	-	63	33	96	93
Shewanella amazonensis	Gamma	CP000507	3645	45	29	3	44	24	5	8	1	1	-	160	57	208	165
Shewanella denitrificans OS217	Gamma	CP000302	3754	28	19	7	34	22	4	8	-	1	-	123	43	158	136
Shewanella frigidimarina NCIMB 400	Gamma	CP000447	4029	39	24	6	33	30	-	8	1	1	1	143	48	185	138
Shewanella oneidensis MR-1	Gamma	AE014299	4467	46	26	7	30	22	5	9	1	1	1	148	57	197	135
Shewanella sp. ANA-3	Gamma	CP000469	4360	44	36	4	36	23	5	9	1	1	1	160	57	207	135
Shewanella sp. MR-4	Gamma	CP000446	3924	45	32	5	37	24	4	9	1	1	1	159	54	206	151
Shewanella sp. MR-7	Gamma	CP000444	4014	43	31	5	32	23	5	6	1	1	1	148	53	194	143
Shigella boydii Sb227	Gamma	CP000036	4284	26	2	2	6	5	6	-	1	-	-	48	31	79	93
Shigella dysenteriae Sd197	Gamma	CP000034	4505	22	2	2	7	2	5	-	1	-	-	41	27	68	87
Shigella flexneri 2a str. 301	Gamma	AE005674	4441	25	4	2	6	2	6	-	1	-	-	46	27	73	85
Shigella_sonnei_Ss046	Gamma	CP000038	4461	29	4	1	10	5	5	-	1	-	-	55	31	86	89
Sodalis glossinidius str. 'morsitans'	Gamma	AP008232	2516	10	-	2	2	1	1	-	1	-	-	17	15	32	61
Thiomicrospira crunogena XCL-2	Gamma	CP000109	2196	20	14	2	24	17	6	3	-	-	-	86	27	108	209
Vibrio cholerae O1 biovar eltor str. N16961	Gamma	AE003852	3835	43	45	1	31	10	12	9	1	-	-	152	49	196	171
Vibrio fischeri ES114	Gamma	CP000020	3802	36	43	5	29	9	10	2	1	-	-	135	39	172	151
Vibrio parahaemolyticus RIMD 2210633	Gamma	BA000031	4832	50	30	6	28	16	13	5	1	-	1	150	55	203	136
Vibrio vulnificus CMCP6	Gamma	AE016795	5024	51	52	4	46	20	13	13	1	-	-	200	60	251	153
Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis	Gamma	BA000021	617	-	-	1	-	-	-	-	-	-	-	1	1	2	-
Xanthomonas axonopodis pv. citri str. 306	Gamma	AE008923	4427	61	21	10	20	10	4	3	-	-	-	129	57	178	129
Xanthomonas campestris pv. campestris str. ATCC 33913	Gamma	AE008922	4181	55	20	6	21	10	4	3	-	-	-	119	57	168	121
Xanthomonas oryzae pv. oryzae KACC10331	Gamma	AE013598	4637	42	10	7	12	10	2	3	-	-	-	86	50	128	112
Xylella fastidiosa 9a5c	Gamma	AE003849	2832	14	1	2	1	2	1	1	-	-	-	22	19	38	105
Yersinia pestis CO92	Gamma	AL590842	4067	21	6	3	2	3	3	-	1	-	1	40	11	51	70
Yersinia pseudotuberculosis IP 32953	Gamma	BX936398	4038	26	7	4	3	3	3	1	1	-	1	49	28	77	88
Delta-Proteobacteria	Phylo	GenBank	All	HisK	MCP	STYK	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	All	RRs	Total	IQ
Anaeromyxobacter dehalogenans 2CP-C	Delta	CP000251	4346	85	19	19	10	-	1	5	-	1	-	140	96	227	149
Bdellovibrio bacteriovorus HD100	Delta	BX842601	3587	49	20	5	5	-	1	6	-	4	-	90	41	129	147
Desulfotalea psychrophila LSv54	Delta	CR522870	3234	31	21	4	20	3	1	10	-	1	-	91	31	117	145
Desulfovibrio desulfuricans G20	Delta	CP000112	3775	51	30	1	24	8	2	14	-	-	1	131	65	187	181
Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough	Delta	AE017285	3531	64	28	1	17	9	1	14	-	-	1	135	76	200	185
Geobacter metallireducens GS-15	Delta	CP000148	3532	83	18	2	13	6	1	12	-	1	-	136	81	201	175
Geobacter sulfurreducens PCA	Delta	AE017180	3446	92	33	1	20	8	1	10	-	-	-	165	91	240	201
Lawsonia intracellularis PHE/MN1-00	Delta	AM180252	1342	5	3	-	2	-	-	1	-	-	-	11	9	20	113
Myxococcus xanthus DK 1622	Delta	CP000113	7331	140	21	102	18	-	2	6	-	12	-	301	136	421	112
Pelobacter carbinolicus DSM 2380	Delta	CP000142	3353	34	15	1	21	15	-	5	-	1	-	92	51	132	154
Pelobacter propionicus DSM 2379	Delta	CP000482	3804	74	21	3	20	10	2	9	-	-	-	139	66	191	170
Syntrophobacter fumaroxidans MPOB	Delta	CP000478	4064	73	1	9	7	2	-	6	-	1	-	99	66	158	124
Syntrophus aciditrophicus SB	Delta	CP000252	3168	26	5	-	7	-	-	7	1	3	-	49	33	79	135
Epsilon-Proteobacteria	Phylo	GenBank	All	HisK	MCP	STYK	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	All	RRs	Total	IQ
Campylobacter fetus subsp. fetus 82-40	Epsil	CP000487	1719	12	14	-	6	3	1	-	-	-	-	36	15	50	189
Campylobacter jejuni subsp. jejuni NCTC 11168	Epsil	AL111168	1634	7	10	-	1	-	-	-	-	-	-	18	12	28	146
Helicobacter acinonychis str. Sheeba	Epsil	AM260522	1618	4	4	-	-	-	-	-	-	-	-	8	9	17	111
Helicobacter hepaticus ATCC 51449	Epsil	AE017125	1875	5	9	-	1	-	-	-	-	-	-	15	10	25	124
Helicobacter pylori 26695	Epsil	AE000511	1576	4	4	1	-	-	-	-	-	-	-	9	9	18	108
Thiomicrospira denitrificans ATCC 33889	Epsil	CP000153	2097	37	13	1	22	16	-	3	-	1	-	93	48	134	258
Wolinella succinogenes DSM 1740	Epsil	BX571656	2044	39	31	2	12	9	3	2	-	1	-	99	48	138	273
Firmicutes	Phylo	GenBank	All	HisK	MCP	STYK	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	All	RRs	Total	IQ
Aster yellows witches'-broom phytoplasma AYWB	Firmi	CP000061	695	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Bacillus anthracis str. Ames	Firmi	AE016879	5311	47	13	5	3	6	1	1	-	-	-	76	47	123	104
Bacillus cereus ATCC 14579	Firmi	AE016877	5255	53	13	5	3	4	1	-	-	-	-	79	46	125	101
Bacillus clausii KSM-K16	Firmi	AP006627	4096	43	7	6	1	-	1	1	-	-	-	59	41	100	113
Bacillus halodurans C-125	Firmi	BA000004	4066	44	12	4	3	1	1	2	-	-	-	67	48	113	124
Bacillus licheniformis ATCC 14580	Firmi	AE017333	4196	36	11	3	4	-	2	-	-	-	-	56	37	93	111
Bacillus subtilis subsp. subtilis str. 168	Firmi	AL009126	4105	36	10	4	3	1	2	-	-	-	-	56	35	91	110
Bacillus thuringiensis serovar konkukian str. 97-27	Firmi	AE017355	5117	58	12	4	3	6	1	1	-	-	-	85	51	136	109
Carboxydothermus hydrogenoformans Z-2901	Firmi	CP000141	2620	14	11	4	10	1	1	13	-	-	-	54	20	73	172
Clostridium acetobutylicum ATCC 824	Firmi	AE001437	3848	37	38	5	7	3	1	9	-	-	1	101	43	144	143
Clostridium difficile 630	Firmi	AM180355	3753	50	1	3	18	18	1	-	-	-	-	91			108
Clostridium novyi NT	Firmi	CP000382	2325	22	17	5	4	3	1	4	-	-	1	57	19	76	165
Clostridium perfringens str. 13	Firmi	BA000016	2723	27	-	3	5	1	2	1	-	-	1	40	21	61	121
Clostridium tetani E88	Firmi	AE015927	2442	31	20	1	6	-	1	1	-	-	1	61	30	91	161
Desulfitobacterium hafniense	Firmi	AP008230	5060	66	39	3	16	4	3	15	-	-	-	146	72	217	127
Enterococcus faecalis V583	Firmi	AE016830	3265	16	-	1	1	-	-	-	-	-	-	18	18	36	83
Geobacillus kaustophilus HTA426	Firmi	BA000043	3540	26	6	5	5	3	2	3	-	-	-	50	29	78	119
Lactobacillus acidophilus NCFM	Firmi	CP000033	1864	8	-	1	1	-	1	-	-	-	-	11	8	19	94
Lactobacillus brevis ATCC 367	Firmi	CP000416	2218	10	-	2	2	-	3	-	-	-	-	17	10	27	100
Lactobacillus casei ATCC 334	Firmi	CP000423	2771	15	-	1	-	-		-	-	-	-	16	17	33	90
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842	Firmi	CR954253	1721	6	-	2	3	-	-	-	-	-	-	11	6	17	93
Lactobacillus gasseri ATCC 33323	Firmi	CP000413	1755	5	-	1	-	-		-	-	-	-	6	5	11	65
Lactobacillus johnsonii NCC 533	Firmi	AE017198	1821	9	-	1	-	-	-	-	-	-	-	10	9	19	94
Lactobacillus plantarum WCFS1	Firmi	AL935263	3059	14	-	3	3	-	5	-	-	-	-	25	15	40	88
Lactobacillus sakei subsp. sakei 23K	Firmi	CR936503	1879	9	-	1	-	-		-	-	-	-	10	10	20	103
Lactobacillus salivarius subsp. salivarius UCC118	Firmi	CP000233	2017	8	-	-	1	-	1	-	-	-	-	10	9	19	88
Lactococcus lactis subsp. lactis Il1403	Firmi	AE005176	2321	7	-	1	-	-	-	-	-	-	-	8	7	15	67
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Firmi	CP000414	2005	10	-	1	1	-	1	-	-	-	-	13	10	23	102
Listeria innocua Clip11262	Firmi	AL592022	2968	15	2	2	3	-	3	-	-	-	-	25	18	43	105
Listeria monocytogenes EGD-e	Firmi	AL591824	2846	15	2	2	3	-	3	-	-	-	-	25	14	39	94
Listeria welshimeri serovar 6b str. SLCC5334	Firmi	AM263198	2774	16	4	2	4	-	3	-	-	-	-	29	19	48	117
Mesoplasma florum L1	Firmi	AE017263	682	-	-	1	-	-	-	-	-	-	-	1	-	1	-
Moorella thermoacetica ATCC 39073	Firmi	CP000232	2465	14	6	3	8	-	1	10	-	-	-	42	17	57	137
Mycoplasma capricolum subsp. capricolum ATCC 27343	Firmi	CP000123	812	-	-	1	-	-	-	-	-	-	-	1	-	1	-
Mycoplasma gallisepticum R	Firmi	AE015450	726	-	-	1	-	-	-	-	-	-	-	1	-	1	-
Mycoplasma genitalium G-37	Firmi	L43967	484	-	-	1	-	-	-	-	-	-	-	1	-	1	-
Mycoplasma hyopneumoniae 232	Firmi	AE017332	691	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Mycoplasma mobile 163K	Firmi	AE017308	633	-	-	2	-	-	-	-	-	-	-	2	-	2	-
Mycoplasma mycoides	Firmi	BX293980	1016	-	-	1	-	-	-	-	-	-	-	1	-	1	-
Mycoplasma penetrans HF-2	Firmi	BA000026	1037	-	-	2	-	-	-	-	-	-	-	2	-	2	-
Mycoplasma pneumoniae M129	Firmi	U00089	689	-	-	1	-	-	-	-	-	-	-	1	-	1	-
Mycoplasma pulmonis UAB CTIP	Firmi	AL445566	782	-	-	1	-	-	-	-	-	-	-	1	-	1	-
Mycoplasma synoviae 53	Firmi	AE017245	672	-	-	1	-	-	-	-	-	-	-	1	-	1	-
Oceanobacillus iheyensis HTE831	Firmi	BA000028	3500	19	8	4	2	1	1	2	-	-	-	37	21	58	100
Oenococcus oeni PSU-1	Firmi	CP000411	1691	6	-	1	1	-	1	-	-	-	-	9	6	15	89
Onion yellows phytoplasma OY-M	Firmi	AP006628	754	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Pediococcus pentosaceus ATCC 25745	Firmi	CP000422	1755	8	-	1	1	-	4	-	-	-	-	14	9	23	116
Staphylococcus aureus subsp. aureus N315	Firmi	BA000018	2624	17	-	2	1	-	-	-	-	-	-	20	17	37	100
Staphylococcus epidermidis ATCC 12228	Firmi	AE015929	2419	15	-	2	1	-	-	-	-	-	-	18	16	34	108
Staphylococcus haemolyticus JCSC1435	Firmi	AP006716	2676	16	-	1	1	-	-	-	-	-	-	18	15	33	99
Staphylococcus saprophyticus	Firmi	AP008934	2514	11	-	1	1	-	-	-	-	-	-	13	11	24	85
Streptococcus agalactiae 2603V/R	Firmi	AE009948	2124	18	-	1	-	-	-	-	-	-	-	19	20	39	135
Streptococcus mutans UA159	Firmi	AE014133	1960	14	-	1	-	-	-	-	-	-	-	15	14	29	121
Streptococcus pneumoniae TIGR4	Firmi	AE005672	2094	13	-	4	-	-	-	-	-	-	-	17	14	31	118
Streptococcus pyogenes M1 GAS	Firmi	AE004092	1697	12	-	1	-	-	-	-	-	-	-	13	12	25	121
Streptococcus thermophilus CNRZ1066	Firmi	CP000024	1915	9	-	4	-	-	-	-	-	-	-	13	10	23	118
Symbiobacterium thermophilum IAM 14863	Firmi	AP006840	3337	27	13	1	6	3	-	4	-	-	-	54	34	87	127
Syntrophomonas wolfei subsp. wolfei str. Goettingen	Firmi	CP000448	2504	19	9	4	8	-	-	18	-	1	-	59	24	79	146
Thermoanaerobacter tengcongensis MB4	Firmi	AE008691	2588	17	9	3	5	1	-	6	-	-	-	41	21	59	137
Ureaplasma parvum	Firmi	AF222894	614	-	-	1	-	-	-	-	-	-	-	1	-	1	-
Spirochaetes	Phylo	GenBank	All	HisK	MCP	STYK	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	All	RRs	Total	IQ
Borrelia afzelii PKo	Spiro	CP000395	1215	5	5	-	1	-	1	1	-	-	1	14	6	19	156
Borrelia burgdorferi B31	Spiro	AE001115	1639	4	5	-	1	-	1	1	-	-	1	13	5	17	114
Borrelia garinii PBi	Spiro	CP000013	932	4	5	-	1	-	1	1	-	-	1	13	6	18	183
Leptospira borgpetersenii serovar Hardjo-bovis L550	Spiro	CP000348	2945	32	9	5	4	-	4	3	-	9	-	66	28	90	117
Leptospira interrogans serovar lai str. 56601	Spiro	AE010300	4727	47	13	5	13	3	5	2	-	18	-	106	38	136	122
Treponema denticola ATCC 35405	Spiro	AE017226	2767	7	20	-	7	2	-	4	-	9	-	49	11	59	129
Treponema pallidum subsp. pallidum str. Nichols	Spiro	AE000520	1036	1	4	-	1	-	-	3	-	1	-	10	3	13	124
Other bacteria	Phylo	GenBank	All	HisK	MCP	STYK	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	All	RRs	Total	IQ
Aquifex aeolicus VF5	Aquif	AE000657	1560	4	-	2	7	4	3	1	-	-	-	21	5	26	144
Dehalococcoides ethenogenes 195	Chflex	CP000027	1580	19	-	-	1	-	-	3	-	-	-	23	26	48	223
Dehalococcoides sp. CBDB1	Chflex	AJ965256	1458	26	-	-	1	-	-	3	-	-	-	30	30	58	261
Fusobacterium nucleatum	Fuso	AE009951	2066	7	-	-	-	-	-	-	-	1	-	8	8	16	76
Magnetococcus sp. MC-1	Other	CP000471	3716	100	33	7	25	17	1	16	-	13	-	212	82	278	175
Rhodopirellula baltica SH 1	Planct	BX119912	7325	46	-	60	7	2	1	6	-	3	1	126	58	178	92
Thermotoga maritima MSB8	Thermo	AE000512	1858	8	7	-	9	-	-	10	-	-	-	34	12	42	163
Archaea
Crenarchaeota	Phylo	GenBank	All	HisK	MCP	STYK	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	All	RRs	Total	IQ
Aeropyrum pernix K1	Crenar	BA000002	1841	-	-	4	-	-	-	-	-	-	1	5	-	5	-
Cenarchaeum symbiosum	Crenar	DP000238	2017	-	-	5	-	-	-	-	-	-	-	5	-	5	-
Pyrobaculum aerophilum str. IM2	Crenar	AE009441	2605	-	-	5	-	-	-	-	-	-	1	6	-	6	16
Pyrobaculum islandicum	Crenar	CP000504	1978	-	-	5	-	-	-	-	-	-	1	6	-	6	27
Sulfolobus acidocaldarius DSM 639	Crenar	CP000077	2223	-	-	10	-	-	-	-	-	-	1	11	-	11	55
Sulfolobus solfataricus P2	Crenar	AE006641	2977	-	-	8	-	-	-	-	-	-	1	9	-	9	33
Sulfolobus tokodaii str. 7	Crenar	BA000023	2825	-	-	12	-	-	-	-	-	-	1	13	-	13	53
Thermofilum pendens	Crenar	CP000505	1876	-	-	4	-	-	-	-	-	-	1	5	-	5	-
Euryarchaeota	Phylo	GenBank	All	HisK	MCP	STYK	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	All	RRs	Total	IQ
Archaeoglobus fulgidus DSM 4304	Euryar	AE000782	2420	14	2	3	-	-	-	-	-	-	1	20	10	30	115
Haloarcula marismortui ATCC 43049	Euryar	AY596297	4240	59	17	8	-	-	-	-	-	-	1	85	25	109	119
Halobacterium salinarum NRC-1	Euryar	AE004437	2622	13	17	5	-	-	-	-	-	-	1	36	5	41	117
Haloquadratum walsbyi DSM 16790	Euryar	AM180088	2646	7	-	5	-	-	-	-	-	-	1	13	3	16	52
Methanocaldococcus jannaschii DSM 2661	Euryar	L77117	1786	-	-	3	-	-	-	-	-	-	1	4	-	4	-
Methanococcoides burtonii	Euryar	CP000300	2273	30	1	5	-	-	-	-	-	-	1	37	14	51	132
Methanococcus maripaludis S2	Euryar	BX950229	1722	3	4	4	-	-	-	-	-	-	1	12	3	15	95
Methanopyrus kandleri AV19	Euryar	AE009439	1687	-	-	5	-	-	-	-	-	-	1	6	-	6	30
Methanosaeta thermophila PT	Euryar	CP000477	1696	7	-	3	-	-	-	-	-	-	1	11	4	15	84
Methanosarcina acetivorans C2A	Euryar	AE010299	4540	53	2	5	-	-	-	-	-	1	1	62	15	77	74
Methanosarcina barkeri fusaro	Euryar	CP000099	3625	26	1	5	-	-	-	-	-	-	1	33	11	44	64
Methanosarcina mazei Go1	Euryar	AE008384	3371	33	3	4	-	-	-	-	-	-	1	41	14	55	86
Methanosphaera stadtmanae DSM 3091	Euryar	CP000102	1534	-	-	3	-	-	-	-	-	-	1	4	-	4	-
Methanospirillum hungatei JF-1	Euryar	CP000254	3139	76	27	9	-	-	-	-	-	-	1	113	61	169	181
Methanothermobacter thermautotrophicus str. Delta H	Euryar	AE000666	1873	16	-	3	-	-	-	-	-	-	1	20	8	27	134
Natronomonas pharaonis DSM 2160	Euryar	CR936257	2882	33	19	6	-	-	-	-	-	-	1	59	10	69	145
Picrophilus torridus DSM 9790	Euryar	AE017261	1535	-	-	5	-	-	-	-	-	-	-	5	-	5	-
Pyrococcus abyssi GE5	Euryar	AL096836	1896	1	5	4	-	-	-	-	-	-	2	12	2	14	85
Pyrococcus furiosus DSM 3638	Euryar	AE009950	2125	-	-	5	-	-	-	-	-	-	2	7	-	7	37
Pyrococcus horikoshii OT3	Euryar	BA000001	1955	1	5	4	-	-	-	-	-	-	2	12	2	14	86
Thermococcus kodakarensis KOD1	Euryar	AP006878	2306	0*	5	4	-	-	-	-	-	-	2	11	2	13	68
Thermoplasma acidophilum DSM 1728	Euryar	AL139299	1481	-	-	4	-	-	-	-	-	-	-	4	-	4	-
Thermoplasma volcanium GSS1	Euryar	BA000011	1499	-	-	4	-	-	-	-	-	-	-	4	-	4	-
Uncultured methanogenic archaeon RC-I	Euryar	AM114193	3103	45	3	8	-	-	-	-	-	-	1	57	14	71	128
Nanoarchaeota	Phylo	GenBank	All	HisK	MCP	STYK	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	All	RRs	Total	IQ
Nanoarchaeum equitans Kin4-M	Nanoar	AE017199	535	-	-	3	-	-	-	-	-	-	-	3	-	3	-
Organism name	Phylo	GenBank	Proteins	HisK	MCP	STYK	GGDEF	GGDEF +EAL	EAL	HD-GYP	AC1	AC3	ACIV	All	All RRs	All total	IQ
Total			1042542	8364	2375	1715	2086	1486	551	593	40	504	35	17749	9077	26816	-
% total				47.1%	13.4%	9.7%	11.8%	8.4%	3.1%	3.3%	0.2%	2.8%	0.2%	100.0%

^a The numbers in the table are linked to protein lists, which are further linked to RefSeq and UniProt entries, BLink outputs, and CDD and Pfam domain architectures. Numbers with asterisks indicate the presence of proteins with highly divergent or truncated domains, not included in the total count but listed at the end of the each protein list. Comments and corrections are welcome.