{"id":14337,"date":"2025-01-08T11:20:46","date_gmt":"2025-01-08T16:20:46","guid":{"rendered":"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/?p=14337"},"modified":"2025-01-08T11:20:46","modified_gmt":"2025-01-08T16:20:46","slug":"avian-influenza-a-h5n1-virus-sequences-from-ncbi","status":"publish","type":"post","link":"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2025\/01\/08\/avian-influenza-a-h5n1-virus-sequences-from-ncbi\/","title":{"rendered":"Access Avian Influenza A (H5N1) Virus Sequences from the Current Outbreak at NCBI"},"content":{"rendered":"<p><span data-contrast=\"none\">The U.S. Centers for Disease Control and Prevention (CDC) has been monitoring the <\/span><a href=\"https:\/\/www.cdc.gov\/bird-flu\/situation-summary\/index.html?CDC_AA_refVal=https%3A%2F%2Fwww.cdc.gov%2Fbird-flu%2Fphp%2Favian-flu-summary%2Findex.html\"><span data-contrast=\"none\">ongoing outbreak of the avian influenza A (H5N1) virus<\/span><\/a><span data-contrast=\"none\">. This is widespread globally in wild birds, and has led to sporadic outbreaks in poultry, cows, several species of wild animals, and has been detected in exposed humans. The <\/span><a href=\"https:\/\/www.cdc.gov\/bird-flu\/spotlights\/h5n1-response-12232024.html\"><span data-contrast=\"none\">CDC recently sequenced<\/span><\/a><span data-contrast=\"none\"> the H5N1 virus in two respiratory specimens collected from a <\/span><span data-contrast=\"none\">U.S. <\/span><span data-contrast=\"none\">patient <\/span><span data-contrast=\"none\">who was severely ill and has now died (<\/span><span data-contrast=\"none\">PQ809549-PQ809564)<\/span><span data-contrast=\"none\">.\u00a0<\/span><span data-ccp-props=\"{&quot;134233117&quot;:true,&quot;134233118&quot;:true,&quot;201341983&quot;:0,&quot;335557856&quot;:16777215,&quot;335559740&quot;:240}\">\u00a0<\/span><\/p>\n<p><span data-contrast=\"none\">As <\/span><a href=\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2024\/05\/23\/avian-influenza-a-h5n1-virus-sequences\/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=influenza-outbreak-20250108\"><span data-contrast=\"none\">previously announced<\/span><\/a><span data-contrast=\"none\">, the GenBank sequences, annotations, and metadata including from this patient\u202fare available through NLM\u2019s NCBI resources.<\/span><span data-ccp-props=\"{&quot;134233117&quot;:true,&quot;134233118&quot;:true,&quot;201341983&quot;:0,&quot;335557856&quot;:16777215,&quot;335559740&quot;:240}\">\u00a0<\/span><!--more--><\/p>\n<ul>\n<li style=\"list-style-type: none;\">\n<ul>\n<li data-leveltext=\"\uf0b7\" data-font=\"Symbol\" data-listid=\"3\" data-list-defn-props=\"{&quot;335552541&quot;:1,&quot;335559685&quot;:720,&quot;335559991&quot;:360,&quot;469769226&quot;:&quot;Symbol&quot;,&quot;469769242&quot;:[8226],&quot;469777803&quot;:&quot;left&quot;,&quot;469777804&quot;:&quot;\uf0b7&quot;,&quot;469777815&quot;:&quot;hybridMultilevel&quot;}\" aria-setsize=\"-1\" data-aria-posinset=\"1\" data-aria-level=\"1\"><span style=\"font-size: 17px;\">Follow these CDC surveillance submissions in <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/?term=PRJNA1095491&amp;utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=influenza-outbreak-20250108\">NCBI BioProject<\/a>.\u00a0<\/span><\/li>\n<li data-leveltext=\"\uf0b7\" data-font=\"Symbol\" data-listid=\"3\" data-list-defn-props=\"{&quot;335552541&quot;:1,&quot;335559685&quot;:720,&quot;335559991&quot;:360,&quot;469769226&quot;:&quot;Symbol&quot;,&quot;469769242&quot;:[8226],&quot;469777803&quot;:&quot;left&quot;,&quot;469777804&quot;:&quot;\uf0b7&quot;,&quot;469777815&quot;:&quot;hybridMultilevel&quot;}\" aria-setsize=\"-1\" data-aria-posinset=\"1\" data-aria-level=\"1\"><span style=\"font-size: 17px;\">Find these new sequence records in <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/nuccore\/?term=PQ809549%3APQ809564%5Baccn%5D&amp;utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=influenza-outbreak-20250108\">Nucleotide<\/a><b>.<\/b>\u00a0<\/span><\/li>\n<li data-leveltext=\"\uf0b7\" data-font=\"Symbol\" data-listid=\"3\" data-list-defn-props=\"{&quot;335552541&quot;:1,&quot;335559685&quot;:720,&quot;335559991&quot;:360,&quot;469769226&quot;:&quot;Symbol&quot;,&quot;469769242&quot;:[8226],&quot;469777803&quot;:&quot;left&quot;,&quot;469777804&quot;:&quot;\uf0b7&quot;,&quot;469777815&quot;:&quot;hybridMultilevel&quot;}\" aria-setsize=\"-1\" data-aria-posinset=\"1\" data-aria-level=\"1\"><span style=\"font-size: 17px;\">Explore all H5N1 sequences isolated from humans or search using a variety of filters in <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/labs\/virus\/vssi\/#\/virus?SeqType_s=Nucleotide&amp;VirusLineage_ss=Alphainfluenzavirus,%20taxid:197911&amp;Serotype_s=H5N*&amp;HostLineage_ss=Homo%20sapiens%20(human),%20taxid:9606\">NCBI Virus<\/a><b>.<\/b>\u00a0<\/span><\/li>\n<li data-leveltext=\"\uf0b7\" data-font=\"Symbol\" data-listid=\"3\" data-list-defn-props=\"{&quot;335552541&quot;:1,&quot;335559685&quot;:720,&quot;335559991&quot;:360,&quot;469769226&quot;:&quot;Symbol&quot;,&quot;469769242&quot;:[8226],&quot;469777803&quot;:&quot;left&quot;,&quot;469777804&quot;:&quot;\uf0b7&quot;,&quot;469777815&quot;:&quot;hybridMultilevel&quot;}\" aria-setsize=\"-1\" data-aria-posinset=\"1\" data-aria-level=\"1\"><span style=\"font-size: 17px;\">Download bulk sets of all influenza A sequences in NCBI Datasets.\u00a0<\/span>\n<ul>\n<li data-leveltext=\"\uf0b7\" data-font=\"Symbol\" data-listid=\"3\" data-list-defn-props=\"{&quot;335552541&quot;:1,&quot;335559685&quot;:720,&quot;335559991&quot;:360,&quot;469769226&quot;:&quot;Symbol&quot;,&quot;469769242&quot;:[8226],&quot;469777803&quot;:&quot;left&quot;,&quot;469777804&quot;:&quot;\uf0b7&quot;,&quot;469777815&quot;:&quot;hybridMultilevel&quot;}\" aria-setsize=\"-1\" data-aria-posinset=\"1\" data-aria-level=\"1\"><span style=\"font-size: 17px;\"><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/datasets\/taxonomy\/11320\/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=influenza-outbreak-20250108\">Accessing on the web<\/a>\u00a0<\/span><\/li>\n<li data-leveltext=\"\uf0b7\" data-font=\"Symbol\" data-listid=\"3\" data-list-defn-props=\"{&quot;335552541&quot;:1,&quot;335559685&quot;:720,&quot;335559991&quot;:360,&quot;469769226&quot;:&quot;Symbol&quot;,&quot;469769242&quot;:[8226],&quot;469777803&quot;:&quot;left&quot;,&quot;469777804&quot;:&quot;\uf0b7&quot;,&quot;469777815&quot;:&quot;hybridMultilevel&quot;}\" aria-setsize=\"-1\" data-aria-posinset=\"1\" data-aria-level=\"1\"><span style=\"font-size: 17px;\"><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/datasets\/docs\/v2\/command-line-tools\/download-and-install\/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=influenza-outbreak-20250108\">Accessing via command-line<\/a>\u00a0<\/span><\/li>\n<\/ul>\n<\/li>\n<li data-leveltext=\"\uf0b7\" data-font=\"Symbol\" data-listid=\"3\" data-list-defn-props=\"{&quot;335552541&quot;:1,&quot;335559685&quot;:720,&quot;335559991&quot;:360,&quot;469769226&quot;:&quot;Symbol&quot;,&quot;469769242&quot;:[8226],&quot;469777803&quot;:&quot;left&quot;,&quot;469777804&quot;:&quot;\uf0b7&quot;,&quot;469777815&quot;:&quot;hybridMultilevel&quot;}\" aria-setsize=\"-1\" data-aria-posinset=\"1\" data-aria-level=\"1\"><span style=\"font-size: 17px;\">Contribute sequences that you&#8217;ve generated to GenBank using the <a href=\"https:\/\/submit.ncbi.nlm.nih.gov\/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=influenza-outbreak-20250108\">Submission Portal<\/a>.\u00a0<\/span><\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<h5><b><span data-contrast=\"none\">Learn more<\/span><\/b><span data-ccp-props=\"{&quot;134233117&quot;:true,&quot;134233118&quot;:true,&quot;201341983&quot;:0,&quot;335557856&quot;:16777215,&quot;335559740&quot;:240}\">\u00a0<\/span><\/h5>\n<p><span data-contrast=\"none\">For more information on HN51 bird flu,\u202f<\/span><a href=\"https:\/\/www.cdc.gov\/bird-flu\/situation-summary\/index.html?CDC_AA_refVal=https%3A%2F%2Fwww.cdc.gov%2Fbird-flu%2Fphp%2Favian-flu-summary%2Findex.html\"><span data-contrast=\"none\">visit the CDC website<\/span><\/a><span data-contrast=\"none\">.<\/span><span data-ccp-props=\"{&quot;134233117&quot;:true,&quot;134233118&quot;:true,&quot;201341983&quot;:0,&quot;335557856&quot;:16777215,&quot;335559740&quot;:240}\">\u00a0<\/span><\/p>\n<h5><b><span data-contrast=\"none\">Stay up to date<\/span><\/b><span data-ccp-props=\"{&quot;134233117&quot;:true,&quot;134233118&quot;:true,&quot;201341983&quot;:0,&quot;335557856&quot;:16777215,&quot;335559740&quot;:240}\">\u00a0<\/span><\/h5>\n<p><span data-contrast=\"none\">Follow us on social media\u202f<\/span><a href=\"https:\/\/twitter.com\/ncbi\"><span data-contrast=\"none\">@NCBI\u202f<\/span><\/a><span data-contrast=\"none\">and\u202f<\/span><a href=\"https:\/\/public.govdelivery.com\/accounts\/USNLMOCPL\/subscriber\/new?topic_id=USNLMOCPL_52\"><span data-contrast=\"none\">join our mailing list\u202f<\/span><\/a><span data-contrast=\"none\">to keep up to date with\u202fGenBank\u202fand other NCBI news.<\/span><span data-ccp-props=\"{&quot;134233117&quot;:true,&quot;134233118&quot;:true,&quot;201341983&quot;:0,&quot;335557856&quot;:16777215,&quot;335559740&quot;:240}\">\u00a0<\/span><\/p>\n<h5><b><span data-contrast=\"none\">Questions?<\/span><\/b><span data-ccp-props=\"{&quot;134233117&quot;:true,&quot;134233118&quot;:true,&quot;201341983&quot;:0,&quot;335557856&quot;:16777215,&quot;335559740&quot;:240}\">\u00a0<\/span><\/h5>\n<p><span data-contrast=\"none\">Please\u202f<\/span><a href=\"https:\/\/support.nlm.nih.gov\/support\/create-case\/\"><span data-contrast=\"none\">reach out to us\u202f<\/span><\/a><span data-contrast=\"none\">with questions or feedback.<\/span><span data-ccp-props=\"{&quot;134233117&quot;:true,&quot;134233118&quot;:true,&quot;201341983&quot;:0,&quot;335557856&quot;:16777215,&quot;335559740&quot;:240}\">\u00a0<\/span><\/p>\n","protected":false},"excerpt":{"rendered":"<p>The U.S. Centers for Disease Control and Prevention (CDC) has been monitoring the ongoing outbreak of the avian influenza A (H5N1) virus. This is widespread globally in wild birds, and has led to sporadic outbreaks in poultry, cows, several species of wild animals, and has been detected in exposed humans. The CDC recently sequenced the &hellip; <a href=\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2025\/01\/08\/avian-influenza-a-h5n1-virus-sequences-from-ncbi\/\" class=\"more-link\">Continue reading <span class=\"screen-reader-text\">Access Avian Influenza A (H5N1) Virus Sequences from the Current Outbreak at NCBI<\/span> <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":42204617,"featured_media":14340,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_coblocks_attr":"","_coblocks_dimensions":"","_coblocks_responsive_height":"","_coblocks_accordion_ie_support":"","jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"footnotes":"","jetpack_publicize_message":"Access Avian Influenza A (H5N1) Virus Sequences from the Current Outbreak at NCBI","jetpack_publicize_feature_enabled":true,"jetpack_social_post_already_shared":true,"jetpack_social_options":{"image_generator_settings":{"template":"highway","enabled":false},"version":2}},"categories":[2248],"tags":[1201719,29189,693060836,3064946,693060764],"table_tags":[],"class_list":["post-14337","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-whats-new","tag-genbank","tag-influenza","tag-ncbi-datasets","tag-nucleotide","tag-ncbi-virus"],"jetpack_publicize_connections":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v24.6 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>Access Avian Influenza A (H5N1) Virus Sequences from the Current Outbreak at NCBI - NCBI Insights<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2025\/01\/08\/avian-influenza-a-h5n1-virus-sequences-from-ncbi\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Access Avian Influenza A (H5N1) Virus Sequences from the Current Outbreak at NCBI - NCBI Insights\" \/>\n<meta property=\"og:description\" content=\"The U.S. Centers for Disease Control and Prevention (CDC) has been monitoring the ongoing outbreak of the avian influenza A (H5N1) virus. This is widespread globally in wild birds, and has led to sporadic outbreaks in poultry, cows, several species of wild animals, and has been detected in exposed humans. The CDC recently sequenced the &hellip; Continue reading Access Avian Influenza A (H5N1) Virus Sequences from the Current Outbreak at NCBI &rarr;\" \/>\n<meta property=\"og:url\" content=\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2025\/01\/08\/avian-influenza-a-h5n1-virus-sequences-from-ncbi\/\" \/>\n<meta property=\"og:site_name\" content=\"NCBI Insights\" \/>\n<meta property=\"article:publisher\" content=\"https:\/\/www.facebook.com\/ncbi.nlm\" \/>\n<meta property=\"article:published_time\" content=\"2025-01-08T16:20:46+00:00\" \/>\n<meta property=\"og:image\" content=\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/wp-content\/uploads\/2025\/01\/human-avian-flu_social-3-e1736289919445.png\" \/>\n\t<meta property=\"og:image:width\" content=\"1100\" \/>\n\t<meta property=\"og:image:height\" content=\"575\" \/>\n\t<meta property=\"og:image:type\" content=\"image\/png\" \/>\n<meta name=\"author\" content=\"NCBI Staff\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:creator\" content=\"@NCBI\" \/>\n<meta name=\"twitter:site\" content=\"@NCBI\" \/>\n<meta name=\"twitter:label1\" content=\"Written by\" \/>\n\t<meta name=\"twitter:data1\" content=\"NCBI Staff\" \/>\n\t<meta name=\"twitter:label2\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data2\" content=\"2 minutes\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"Article\",\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2025\/01\/08\/avian-influenza-a-h5n1-virus-sequences-from-ncbi\/#article\",\"isPartOf\":{\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2025\/01\/08\/avian-influenza-a-h5n1-virus-sequences-from-ncbi\/\"},\"author\":{\"name\":\"NCBI Staff\",\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/#\/schema\/person\/4f41ea6a31cea38a9a1b1419c048e50b\"},\"headline\":\"Access Avian Influenza A (H5N1) Virus Sequences from the Current Outbreak at NCBI\",\"datePublished\":\"2025-01-08T16:20:46+00:00\",\"mainEntityOfPage\":{\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2025\/01\/08\/avian-influenza-a-h5n1-virus-sequences-from-ncbi\/\"},\"wordCount\":226,\"commentCount\":0,\"publisher\":{\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/#organization\"},\"image\":{\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2025\/01\/08\/avian-influenza-a-h5n1-virus-sequences-from-ncbi\/#primaryimage\"},\"thumbnailUrl\":\"https:\/\/i0.wp.com\/ncbiinsights.ncbi.nlm.nih.gov\/wp-content\/uploads\/2025\/01\/human-avian-flu_social-3-e1736289919445.png?fit=1100%2C575&ssl=1\",\"keywords\":[\"GenBank\",\"Influenza\",\"NCBI Datasets\",\"NCBI Nucleotide\",\"NCBI Virus\"],\"articleSection\":[\"What's New\"],\"inLanguage\":\"en-US\",\"potentialAction\":[{\"@type\":\"CommentAction\",\"name\":\"Comment\",\"target\":[\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2025\/01\/08\/avian-influenza-a-h5n1-virus-sequences-from-ncbi\/#respond\"]}]},{\"@type\":\"WebPage\",\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2025\/01\/08\/avian-influenza-a-h5n1-virus-sequences-from-ncbi\/\",\"url\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2025\/01\/08\/avian-influenza-a-h5n1-virus-sequences-from-ncbi\/\",\"name\":\"Access Avian Influenza A (H5N1) Virus Sequences from the Current Outbreak at NCBI - NCBI Insights\",\"isPartOf\":{\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/#website\"},\"primaryImageOfPage\":{\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2025\/01\/08\/avian-influenza-a-h5n1-virus-sequences-from-ncbi\/#primaryimage\"},\"image\":{\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2025\/01\/08\/avian-influenza-a-h5n1-virus-sequences-from-ncbi\/#primaryimage\"},\"thumbnailUrl\":\"https:\/\/i0.wp.com\/ncbiinsights.ncbi.nlm.nih.gov\/wp-content\/uploads\/2025\/01\/human-avian-flu_social-3-e1736289919445.png?fit=1100%2C575&ssl=1\",\"datePublished\":\"2025-01-08T16:20:46+00:00\",\"breadcrumb\":{\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2025\/01\/08\/avian-influenza-a-h5n1-virus-sequences-from-ncbi\/#breadcrumb\"},\"inLanguage\":\"en-US\",\"potentialAction\":[{\"@type\":\"ReadAction\",\"target\":[\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2025\/01\/08\/avian-influenza-a-h5n1-virus-sequences-from-ncbi\/\"]}]},{\"@type\":\"ImageObject\",\"inLanguage\":\"en-US\",\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2025\/01\/08\/avian-influenza-a-h5n1-virus-sequences-from-ncbi\/#primaryimage\",\"url\":\"https:\/\/i0.wp.com\/ncbiinsights.ncbi.nlm.nih.gov\/wp-content\/uploads\/2025\/01\/human-avian-flu_social-3-e1736289919445.png?fit=1100%2C575&ssl=1\",\"contentUrl\":\"https:\/\/i0.wp.com\/ncbiinsights.ncbi.nlm.nih.gov\/wp-content\/uploads\/2025\/01\/human-avian-flu_social-3-e1736289919445.png?fit=1100%2C575&ssl=1\",\"width\":1100,\"height\":575,\"caption\":\"Image of a virus cell in the background. 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