{"id":13335,"date":"2024-05-28T09:41:39","date_gmt":"2024-05-28T13:41:39","guid":{"rendered":"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/?p=13335"},"modified":"2024-05-28T09:41:39","modified_gmt":"2024-05-28T13:41:39","slug":"ncbi-niaid-virtual-amr-codeathon","status":"publish","type":"post","link":"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2024\/05\/28\/ncbi-niaid-virtual-amr-codeathon\/","title":{"rendered":"NCBI &#038; NIAID Join Forces to Co-Host Virtual AMR Codeathon"},"content":{"rendered":"<h4><i><span data-contrast=\"auto\">Resistance is Futile: A codeathon to combat antimicrobial resistance<\/span><\/i><span data-ccp-props=\"{&quot;201341983&quot;:0,&quot;335559739&quot;:160,&quot;335559740&quot;:259}\">\u00a0<\/span><\/h4>\n<p><span data-contrast=\"auto\">Do you perform antimicrobial resistance (AMR) research, or would you like to join a team to work on microbial and AMR data analysis? NCBI is joining forces with the <\/span><a href=\"https:\/\/www.niaid.nih.gov\/\"><span data-contrast=\"none\">National Institute of Allergy and Infectious Diseases (NIAID)<\/span><\/a><span data-contrast=\"auto\"> to co-host a virtual codeathon, <\/span><i><span data-contrast=\"auto\">Resistance is Futile: A codeathon to combat antimicrobial resistance<\/span><\/i><span data-contrast=\"auto\">, which will take place September 23-27, 2024.\u00a0<\/span><span data-ccp-props=\"{&quot;201341983&quot;:0,&quot;335559739&quot;:160,&quot;335559740&quot;:259}\">\u00a0<\/span><!--more--><\/p>\n<h5>Event details<\/h5>\n<p><span data-contrast=\"auto\">This event is an opportunity to explore the <\/span><a href=\"https:\/\/ncbi.nlm.nih.gov\/pathogens\/antimicrobial-resistance\/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=codathon-amr-20240528\"><span data-contrast=\"none\">National Database of Antibiotic Resistant Organisms (NDARO)<\/span><\/a><span data-contrast=\"auto\"> and related AMR data with <\/span><a href=\"https:\/\/ncbi.nlm.nih.gov\/pathogens?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=codathon-amr-20240528\"><span data-contrast=\"none\">NCBI Pathogen Detection<\/span><\/a><span data-contrast=\"auto\"> tools, such as the <\/span><a href=\"https:\/\/ncbi.nlm.nih.gov\/pathogens\/isolates\/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=codathon-amr-20240528\"><span data-contrast=\"none\">Isolates<\/span><\/a><span data-contrast=\"auto\">, <\/span><a href=\"https:\/\/ncbi.nlm.nih.gov\/pathogens\/microbigge\/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=codathon-amr-20240528\"><span data-contrast=\"none\">MicroBIGG-E<\/span><\/a>,<span data-contrast=\"auto\"> and <\/span><a href=\"https:\/\/ncbi.nlm.nih.gov\/pathogens\/ast?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=codathon-amr-20240528\"><span data-contrast=\"none\">Antibiotic Susceptibility Test (AST)<\/span><\/a><span data-contrast=\"auto\"> Browsers to identify additional data that may be useful for your project.<\/span><span data-ccp-props=\"{&quot;201341983&quot;:0,&quot;335559739&quot;:160,&quot;335559740&quot;:259}\">\u00a0<\/span><\/p>\n<p><span data-contrast=\"auto\">During the week-long codeathon, you will collaborate with your team to accomplish the following objectives:<\/span><span data-ccp-props=\"{&quot;201341983&quot;:0,&quot;335559739&quot;:160,&quot;335559740&quot;:259}\">\u00a0<\/span><\/p>\n<ul>\n<li data-leveltext=\"\uf0b7\" data-font=\"Symbol\" data-listid=\"1\" data-list-defn-props=\"{&quot;335552541&quot;:1,&quot;335559685&quot;:720,&quot;335559991&quot;:360,&quot;469769226&quot;:&quot;Symbol&quot;,&quot;469769242&quot;:[8226],&quot;469777803&quot;:&quot;left&quot;,&quot;469777804&quot;:&quot;\uf0b7&quot;,&quot;469777815&quot;:&quot;hybridMultilevel&quot;}\" aria-setsize=\"-1\" data-aria-posinset=\"1\" data-aria-level=\"1\"><span style=\"font-size: 17px;\">Identify loss-of-function genetic variations that contribute to AMR.\u00a0<\/span><\/li>\n<li data-leveltext=\"\uf0b7\" data-font=\"Symbol\" data-listid=\"1\" data-list-defn-props=\"{&quot;335552541&quot;:1,&quot;335559685&quot;:720,&quot;335559991&quot;:360,&quot;469769226&quot;:&quot;Symbol&quot;,&quot;469769242&quot;:[8226],&quot;469777803&quot;:&quot;left&quot;,&quot;469777804&quot;:&quot;\uf0b7&quot;,&quot;469777815&quot;:&quot;hybridMultilevel&quot;}\" aria-setsize=\"-1\" data-aria-posinset=\"2\" data-aria-level=\"1\"><span style=\"font-size: 17px;\">Find and classify mobile genetic elements that contribute to AMR in draft genomes. Note: This work could integrate sequence data with epidemiological, transmission, and antibiotic sensitivity testing data to identify patterns and directions of co-migrating of AMR genes or plasmids.\u00a0<\/span><\/li>\n<li data-leveltext=\"\uf0b7\" data-font=\"Symbol\" data-listid=\"1\" data-list-defn-props=\"{&quot;335552541&quot;:1,&quot;335559685&quot;:720,&quot;335559991&quot;:360,&quot;469769226&quot;:&quot;Symbol&quot;,&quot;469769242&quot;:[8226],&quot;469777803&quot;:&quot;left&quot;,&quot;469777804&quot;:&quot;\uf0b7&quot;,&quot;469777815&quot;:&quot;hybridMultilevel&quot;}\" aria-setsize=\"-1\" data-aria-posinset=\"3\" data-aria-level=\"1\"><span style=\"font-size: 17px;\">Elucidate AMR biomarkers for historically hard-to-predict bacterial species (e.g., Acinetobacter, Pseudomonas).\u00a0<\/span><\/li>\n<\/ul>\n<p><span data-contrast=\"auto\">At the end of the event, you and your team will present your work to other teams and representatives from the National Institutes of Health (NIH).<\/span><span data-ccp-props=\"{&quot;201341983&quot;:0,&quot;335559739&quot;:160,&quot;335559740&quot;:259}\">\u00a0<\/span><\/p>\n<h5>Interested in attending? Apply today!<\/h5>\n<p><span data-contrast=\"auto\">Please review the event description and application form for more details. If you\u2019re interested in participating, pitching an idea for a team project, and\/or serving as a team leader, please apply by midnight July 28, 2024, ET.<\/span><span data-ccp-props=\"{&quot;201341983&quot;:0,&quot;335559739&quot;:160,&quot;335559740&quot;:259}\">\u00a0<\/span><\/p>\n<p><a href=\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/event\/2024amrcodeathon\/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=codathon-amr-20240528\"><b><span data-contrast=\"none\">Learn more and apply today!\u00a0<\/span><\/b><\/a><b><span data-contrast=\"auto\">\u00a0<\/span><\/b><span data-ccp-props=\"{&quot;201341983&quot;:0,&quot;335559739&quot;:160,&quot;335559740&quot;:259}\">\u00a0<\/span><\/p>\n<h5>Stay up to date<\/h5>\n<p><span data-contrast=\"auto\">Follow us on social media\u202f<\/span><a href=\"mailto:https:\/\/x.com\/NCBI\"><span data-contrast=\"none\">@NCBI<\/span><\/a><span data-contrast=\"auto\">\u202fand\u202f<\/span><a href=\"https:\/\/public.govdelivery.com\/accounts\/USNLMOCPL\/subscriber\/new?topic_id=USNLMOCPL_52\"><span data-contrast=\"none\">join our mailing list<\/span><\/a><span data-contrast=\"auto\">\u202fto keep up to date with NCBI news and events. We encourage you to keep an eye out for other\u202f<\/span><a href=\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/ncbi-outreach-events?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=codathon-amr-20240528\"><span data-contrast=\"none\">upcoming outreach events<\/span><\/a><span data-contrast=\"auto\">.\u202f\u202f\u00a0<\/span><span data-ccp-props=\"{&quot;201341983&quot;:0,&quot;335559739&quot;:160,&quot;335559740&quot;:259}\">\u00a0<\/span><\/p>\n<h5>Questions?<\/h5>\n<p><span data-contrast=\"auto\">Please feel free to <\/span><a href=\"mailto:codeathons@ncbi.nlm.nih.gov\"><span data-contrast=\"none\">contact us<\/span><\/a><span data-contrast=\"auto\"> if you have any questions about this event.<\/span><span data-ccp-props=\"{&quot;201341983&quot;:0,&quot;335559739&quot;:160,&quot;335559740&quot;:259}\">\u00a0<\/span><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Resistance is Futile: A codeathon to combat antimicrobial resistance\u00a0 Do you perform antimicrobial resistance (AMR) research, or would you like to join a team to work on microbial and AMR data analysis? NCBI is joining forces with the National Institute of Allergy and Infectious Diseases (NIAID) to co-host a virtual codeathon, Resistance is Futile: A &hellip; <a href=\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2024\/05\/28\/ncbi-niaid-virtual-amr-codeathon\/\" class=\"more-link\">Continue reading <span class=\"screen-reader-text\">NCBI &#038; NIAID Join Forces to Co-Host Virtual AMR Codeathon<\/span> <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":42204617,"featured_media":13337,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_coblocks_attr":"","_coblocks_dimensions":"","_coblocks_responsive_height":"","_coblocks_accordion_ie_support":"","jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"footnotes":"","jetpack_publicize_message":"NCBI & NIAID Join Forces to Co-Host Virtual AMR Codeathon","jetpack_publicize_feature_enabled":true,"jetpack_social_post_already_shared":true,"jetpack_social_options":{"image_generator_settings":{"template":"highway","enabled":false},"version":2}},"categories":[2248],"tags":[4803295,4923246,20148090],"table_tags":[],"class_list":["post-13335","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-whats-new","tag-antimicrobial-resistance","tag-codeathon","tag-pathogen-detection"],"jetpack_publicize_connections":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v24.6 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>NCBI &amp; NIAID Join Forces to Co-Host Virtual AMR Codeathon - NCBI Insights<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2024\/05\/28\/ncbi-niaid-virtual-amr-codeathon\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"NCBI &amp; NIAID Join Forces to Co-Host Virtual AMR Codeathon - NCBI Insights\" \/>\n<meta property=\"og:description\" content=\"Resistance is Futile: A codeathon to combat antimicrobial resistance\u00a0 Do you perform antimicrobial resistance (AMR) research, or would you like to join a team to work on microbial and AMR data analysis? 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