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<meta name="description" content="Explore genetic variations and their clinical significance. Search known variants by gene, phenotype or location - or upload and compare your own data."/>
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"units": [{"name": "Primary Assembly", "acc": "GCF_000001305.13", "taxid": 9606, "type": "Primary-Unit", "seq": [{"name": "1", "ucsc_name": "chr1", "chrom": 1, "topl": 1, "length": 249250621, "acc": "NC_000001.10", "gi": 224589800}, {"name": "2", "ucsc_name": "chr2", "chrom": 1, "topl": 1, "length": 243199373, "acc": "NC_000002.11", "gi": 224589811}, {"name": "3", "ucsc_name": "chr3", "chrom": 1, "topl": 1, "length": 198022430, "acc": "NC_000003.11", "gi": 224589815}, {"name": "4", "ucsc_name": "chr4", "chrom": 1, "topl": 1, "length": 191154276, "acc": "NC_000004.11", "gi": 224589816}, {"name": "5", "ucsc_name": "chr5", "chrom": 1, "topl": 1, "length": 180915260, "acc": "NC_000005.9", "gi": 224589817}, {"name": "6", "ucsc_name": "chr6", "chrom": 1, "topl": 1, "length": 171115067, "acc": "NC_000006.11", "gi": 224589818}, {"name": "7", "ucsc_name": "chr7", "chrom": 1, "topl": 1, "length": 159138663, "acc": "NC_000007.13", "gi": 224589819}, {"name": "8", "ucsc_name": "chr8", "chrom": 1, 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90354753, "acc": "NC_000016.9", "gi": 224589807}, {"name": "17", "ucsc_name": "chr17", "chrom": 1, "topl": 1, "length": 81195210, "acc": "NC_000017.10", "gi": 224589808}, {"name": "18", "ucsc_name": "chr18", "chrom": 1, "topl": 1, "length": 78077248, "acc": "NC_000018.9", "gi": 224589809}, {"name": "19", "ucsc_name": "chr19", "chrom": 1, "topl": 1, "length": 59128983, "acc": "NC_000019.9", "gi": 224589810}, {"name": "20", "ucsc_name": "chr20", "chrom": 1, "topl": 1, "length": 63025520, "acc": "NC_000020.10", "gi": 224589812}, {"name": "21", "ucsc_name": "chr21", "chrom": 1, "topl": 1, "length": 48129895, "acc": "NC_000021.8", "gi": 224589813}, {"name": "22", "ucsc_name": "chr22", "chrom": 1, "topl": 1, "length": 51304566, "acc": "NC_000022.10", "gi": 224589814}, {"name": "X", "ucsc_name": "chrX", "chrom": 1, "topl": 1, "length": 155270560, "acc": "NC_000023.10", "gi": 224589822}, {"name": "Y", "ucsc_name": "chrY", "chrom": 1, "topl": 1, "length": 59373566, "acc": "NC_000024.9", "gi": 224589823}]}, {"name": "ALT_REF_LOCI_1", "acc": "GCF_000001315.1", "taxid": 9606, "type": "Alt-Loci", "seq": [{"name": "6", "seqname": "6"}]}, {"name": "ALT_REF_LOCI_2", "acc": "GCF_000001325.2", "taxid": 9606, "type": "Alt-Loci", "seq": [{"name": "6", "seqname": "6"}]}, {"name": "ALT_REF_LOCI_3", "acc": "GCF_000001335.1", "taxid": 9606, "type": "Alt-Loci", "seq": [{"name": "6", "seqname": "6"}]}, {"name": "ALT_REF_LOCI_4", "acc": "GCF_000001345.1", "taxid": 9606, "type": "Alt-Loci", "seq": [{"name": "6", "seqname": "6"}]}, {"name": "ALT_REF_LOCI_5", "acc": "GCF_000001355.1", "taxid": 9606, "type": "Alt-Loci", "seq": [{"name": "6", "seqname": "6"}]}, {"name": "ALT_REF_LOCI_6", "acc": "GCF_000001365.2", "taxid": 9606, "type": "Alt-Loci", "seq": [{"name": "6", "seqname": "6"}]}, {"name": "ALT_REF_LOCI_7", "acc": "GCF_000001375.1", "taxid": 9606, "type": "Alt-Loci", "seq": [{"name": "6", "seqname": "6"}]}, {"name": "ALT_REF_LOCI_8", "acc": "GCF_000001385.1", "taxid": 9606, "type": "Alt-Loci", "seq": [{"name": "4", "seqname": "4"}]}, {"name": "ALT_REF_LOCI_9", "acc": "GCF_000001395.1", "taxid": 9606, "type": "Alt-Loci", "seq": [{"name": "17", "seqname": "17"}]}, {"name": "PATCHES", "acc": "GCF_000005045.12", "taxid": 9606, "type": "Assembly-Patch", "seq": [{"name": "1", "seqname": "1"}, {"name": "2", "seqname": "2"}, {"name": "3", "seqname": "3"}, {"name": "4", "seqname": "4"}, {"name": "5", "seqname": "5"}, {"name": "6", "seqname": "6"}, {"name": "7", "seqname": "7"}, {"name": "8", "seqname": "8"}, {"name": "9", "seqname": "9"}, {"name": "10", "seqname": "10"}, {"name": "11", "seqname": "11"}, {"name": "12", "seqname": "12"}, {"name": "13", "seqname": "13"}, {"name": "14", "seqname": "14"}, {"name": "15", "seqname": "15"}, {"name": "16", "seqname": "16"}, {"name": "17", "seqname": "17"}, {"name": "18", "seqname": "18"}, {"name": "19", "seqname": "19"}, {"name": "20", "seqname": "20"}, {"name": "21", "seqname": "21"}, {"name": "22", "seqname": "22"}, {"name": "X", "seqname": "X"}]}, {"name": "non-nuclear", "acc": "GCF_000006015.1", "taxid": 9606, "type": "Assembly-Unit", "seq": [{"name": "MT", "ucsc_name": "chrM", "chrom": 1, "topl": 1, "length": 16569, "acc": "NC_012920.1", "gi": 251831106}]}]}]};
return defs;}
GB.config.loc = {"query": "rs3917", "assm": "GCF_000001405.40", "queryType": "variation", "type": "variation", "name": "rs3917", "acc": "NC_000007.14", "start": 94431048, "stop": 94431047, "orientation": "", "id": ""};
</script>
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<div class="header gb-page-header">
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<div>
<div class="res_logo">
<h1 class="res_name">
<a>Variation Viewer</a>
</h1>
<h2 class="res_tagline">Version 3.2</h2>
</div>
</div>
</div>
<div class="gb-header-right">
<div>
<div class="gb-header-content">
<div class="gb-header-links-top"></div>
<div>
<div class="gb-header-links">
<ul>
<li>
<a href="javascript:void(0)" id="gb-share-page" class="gb-share-page" title="Create URL with the current state that can be shared">Share this page</a>
</li>
<li>
<a href="javascript:void(0)" id="gb-reset-page" class="gb-reset-page" title="Reset saved state">Reset All</a>
</li>
<li class="gb-menu">
<a href="javascript:void(0)">More Info</a>
<ul style="right:5em">
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<a href="/variation/view/help/" target="gvar_help">Help</a>
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<li class="help">
<a class="gb-youtube" href="https://www.youtube.com/watch?v=rnWZ9MFBwUM" title="Watch the Variation Viewer introduction" target="gvar_help" alt="Link to Variation Viewer introduction video on YouTube" role="button" aria-expanded="false" aria-haspopup="true"></a>
</li>
</ul>
</div>
</div>
</div>
</div>
<div class="gb-state gb-off">
<div class="gb-state-panel">
<span class="gb-state-panel-close"></span>
<div class="gb-state-section">
<span class="gb-state-header">URL for current configuration</span>
</div>
<div class="gb-state-section gb-section-url">
<span class="gb-state-url"></span>
</div>
<div class="gb-state-section">
<span class="gb-state-comment">This URL is a temporary URL and is valid approximately for 90 days.</span>
</div>
</div>
</div>
</div>
</div>
<div>
<div class="gb-page-content-top">
<div widget-name="top-bar" class="gb-top-control-bar">
<div class="gb-search-bar gb-search-top gb-hidden">
<span>
<div class="gb-header">
<span>Search assembly</span>
</div>
<div class="gb-search-ctrl">
<label for="loc-search-top" aria-label="Search"></label>
<input id="loc-search-top" type="text" placeholder=""/ value="rs3917">
<span class="gb-search-go" aria-label="Search"></span>
</div>
<div class="comment">
<span class="gb-search-help" title="Expand for search examples">Examples</span>
<ul search-id="loc-search-top"></ul>
</div>
</span>
<div class="gb-search gb-search-content gb-hidden" for="loc-search-top">
<div class="gb-ctrl">
<span class="gb-close"></span>
</div>
<div class="content-results">
<ul class="content-tabs"></ul>
</div>
</div>
</div>
<div>
<span class="gb-org"></span>
<assembly-wrap>
<span class="gb-assm">
<span>Assembly:</span>
<span class="gb-select">
<select></select>
</span>
</span>
<span>▪</span>
<span class="gb-range">
<span class="gb-select">
<select></select>
</span>
</span>
</assembly-wrap>
</div>
</div>
</div>
<div class="gb-page-content">
<div class="content-left">
<div class="gb-region-navigator gb-top">
<div section-name="header" class="gb-section ">
<div class="gb-org"></div>
<div class="gb-assm"></div>
</div>
<div section-name="loc-search-top" class="gb-section gb-search-top ">
<div>
<div class="gb-header">
<span>Search assembly</span>
</div>
<div class="gb-search-ctrl">
<label for="loc-search" aria-label="Search"></label>
<input id="loc-search" type="text" placeholder="" value="rs3917"/>
<span class="gb-search-go" aria-label="Search"></span>
</div>
<div class="comment">
<span class="gb-search-help" title="Expand for search examples">Examples</span>
<ul search-id="loc-search"></ul>
</div>
</div>
</div>
<div section-name="loc-search" for="loc-search" class="gb-section gb-search gb-search-content gb-hidden">
<div class="gb-section-body">
<div class="gb-ctrl">
<span class="gb-close"></span>
</div>
<div class="content-results">
<ul class="content-tabs"></ul>
</div>
</div>
</div>
<div config="showAcc:false" class="gb-section" section-name="ds-selector">
<h4><span></span><span>Pick Assembly</span></h4>
<div class="gb-section-body">
<div class="gb-ds-selector-wrap">
<div><a href="#" class="gb-ds-selector"></a></div>
<div class="gb-ds-selector-comment">
<span class="comment">Select an assembly and annotation to change view</span>
</div>
<div class="gb-ds-selector-comment gb-ds-selector-extra"></div>
</div>
</div>
</div>
<div class="gb-section " section-name="user-data">
<h4 title="Configure tracks, upload data, add remote tracks or track hubs">
<span></span>
<span>Tracks and User Data</span>
</h4>
<div class="gb-section-body">
<div class="gb-user-data">
<div class="gb-track-sect">
<span>
<a class="gb-select gb-menu-empty" href="#menu">- no added tracks or track hubs -</a>
<a class="gb-menu" href="#menu" role="button">
<span>Options</span>
</a>
</span>
</div>
<div class="gb-file-upload gb-upload">
<div class="gb-track-data">
<div class="gb-name"></div>
<div class="gb-track-grid">
<div class="grid-header">
<table>
<thead>
<tr>
<th class="gbs-name">Name</th>
<th class="gbs-location">Location</th>
<th class="ctrl">
<span></span>
</th>
</tr>
<tr>
<th class="gb-acc" colspan="3"></th>
</tr>
</thead>
</table>
</div>
<div class="grid-data-wrap">
<div class="grid-data">
<table>
<tbody>
<tr>
<td></td>
</tr>
</tbody>
</table>
</div>
</div>
<div class="grid-ctrl">
<select>
<option>chr</option>
</select>
<span>
<input type="image" src="/variation/view/static/img/first-b.png" title="first" alt="first page"/>
<input type="image" src="/variation/view/static/img/prev-b.png" title="previous" alt="previous page"/>
<input type="text" id="gb-track-data-page"/>
<input type="image" src="/variation/view/static/img/next-b.png" title="next" alt="next page"/>
<input type="image" src="/variation/view/static/img/last-b.png" title="last" alt="last page"/>
</span>
</div>
<div class="grid-ctrl-info">
<label for="gb-track-data-page">Page 1 of 1</label>
</div>
</div>
<div class="gb-track-info"></div>
</div>
<div class="gb-file-progress"></div>
<div class="gb-uud-help">
<style>.gb-data-formats {
display: table;
}
.gb-data-formats li {
display: table-row;
}
.gb-data-formats span,
.gb-data-formats strong,
.gb-data-formats a {
display: table-cell;
}
.gb-data-formats strong {
color: #557;
white-space: nowrap;
font-weight: normal;
}
.gb-data-formats span {
padding: .1em .5em;
}</style>
<p>
<span>
Supported File/Data types
</span>
</p>
<ul>
<li>Uploaded tracks</li>
<ul class="gb-data-formats">
<li><strong>BED</strong>
</li>
<li><strong>GFF3</strong>
</li>
<li><strong>GTF</strong>
</li>
<li><strong>GVF</strong>
</li>
<li><strong>VCF</strong>
</li>
<li><strong>HGVS</strong>
</li>
<li><strong>WIG</strong>
</li>
<li><strong>ASN.1</strong><span> (text and binary)</span>
</li>
</ul>
<li>Remote tracks</li>
<ul class="gb-data-formats">
<li><strong>Remote BAM</strong><span>.bai or CSI index file present at same location</span>
</li>
<li><strong>Remote VCF</strong><span>un-indexed up to 2000 lines or with an index file present at the same location</span>
</li>
<li><strong>BigBed</strong>
</li>
<li><strong>BigWig</strong>
</li>
</ul>
</ul>
</div>
</div>
</div>
</div>
</div>
<div class="gb-section " section-name="gene-history">
<h4 title="">
<span></span>
<span>History</span>
</h4>
<div class="gb-section-body">
<div class="gb-gene-history">
<select>
<option>--- current selection ---</option>
</select>
</div>
<div class="gb-gene-history-comment">
<span class="comment">Select gene from history</span>
</div>
</div>
</div>
<div class="gb-section " section-name="region-details">
<h4 title="">
<span></span>
<span>Assembly Region Details</span>
</h4>
<div class="gb-section-body gb-region-details">
<h5>Features of Interest</h5>
<div class="gb-region-alts gb-none gb-hidden">
<h6>
Other sequence representations
<span class="gb-none">- none for the region</span>
<span class="gb-info">- loading …</span>
</h6>
<div class="gb-data">
<div class="grid-header">
<table>
<tr>
<th class="gb-name">Sequence ID</th>
<th>Type</th>
</tr>
<tr>
<td class="gb-row-header" colspan="2"></td>
</tr>
</table>
</div>
<div class="grid-data">
<table>
<tr>
<td></td>
</tr>
</table>
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